Sun_annotation: Sun's annotation measure of disease similarity calculating
In dSimer: Integration of Disease Similarity Methods

given two vectors of diseases and a list of disease-gene associations, this function will calculate disease similarity by method Sun_annotation

1	Sun_annotation(D1, D2, d2g)

`D1`	a vector consists disease ids
`D2`	another vector consists disease ids
`d2g`	a list of disease-gene associations

a matrix of disease disease simialrity which rownames is D1 and colnames is D2

Peng Ni, Min Li

Sun K, Goncalves JP, Larminie C. Predicting disease associations via biological network analysis[J]. BMC bioinformatics, 2014, 15(1): 304.

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data(d2g_separation)
ds<-sample(names(d2g_separation),5)
Sun_annotation(ds,ds,d2g_separation)

dSimer documentation built on May 2, 2019, 12:40 a.m.

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