FurlongDataSet-dash-class: Data class for the Furlong dataset...

In ddgraph: Distinguish direct and indirect interactions with Graphical Modelling

Description

Data class for the Furlong dataset

Details

A class to hold data from (Zizen 2009) paper (Supp Table 8). This class contains methods to convert it to both binary and continuous DDDataSet objects.

Slots

signalMatrix:

(matrix) the signal matrix

targetClasses:

(factor) the target class names

Methods

names

signature(x = "FurlongDataSet"): Get the names of variables (column names of signal matrix)

signalMatrix

signature(object = "FurlongDataSet"): Retrieve the matrix with raw signal values

classLabels

signature(object = "FurlongDataSet"): Retrieve the vector of class labels (as factors)

toDDDataSet

signature(obj = "FurlongDataSet"): Make the DDDataSet objects by selecting different tissues

References

Robert P. Zinzen et al., "Combinatorial binding predicts spatio-temporal cis-regulatory activity," Nature 462, no. 7269 (November 5, 2009): 65-70.

ddgraph documentation built on Nov. 17, 2017, 10:50 a.m.