Files in ddgraph
Distinguish direct and indirect interactions with Graphical Modelling
.Rinstignore
NAMESPACE
DESCRIPTION
data/toyExample.RData
data/mesoBin.RData
data/mesoCont.RData
man/foldChangeFromFreq.Rd
man/random-dot-bn-dot-fit.Rd
man/calcDependence.Rd
man/dataType-comma-DDDataSet-dash-method.Rd
man/mesoCont.Rd
man/names-comma-DDGraph-dash-method.Rd
man/names-comma-FurlongDataSet-dash-method.Rd
man/mesoBin.Rd
man/adjC-dot-targetInx.Rd
man/makeDDDataSet.Rd
man/readFurlongData.Rd
man/adjC-dot-allVarInx.Rd
man/operators-dash-CITestResult.Rd
man/signalMatrix-comma-FurlongDataSet-dash-method.Rd
man/plotBNLearn.Rd
man/classLabels-comma-FurlongDataSet-dash-method.Rd
man/pValueAfterMultipleTesting.Rd
man/mapEnrichmentToColorsDual.Rd
man/show-comma-CITestResult-dash-method.Rd
man/biased-dot-bn-dot-fit.Rd
man/activePaths.Rd
man/DDDataSet-dash-class.Rd
man/color-dot-legend-dot-DDGraph.Rd
man/convertToFactor.Rd
man/pcalgMB.Rd
man/CITestResultID.Rd
man/extractCITestResultProperty.Rd
man/prob-dot-distr-dot-norm.Rd
man/blockingVariables.Rd
man/mapEnrichmentToColors.Rd
man/ddgraph-package.Rd
man/customPlotPCAlgo.Rd
man/recalculateSVMparams.Rd
man/myX2c.Rd
man/extract-dot-targetInx.Rd
man/show-comma-DDDataSet-dash-method.Rd
man/biased-dot-graph.Rd
man/loocv.Rd
man/ciTest-comma-DDDataSet-dash-method.Rd
man/show-comma-DDGraph-dash-method.Rd
man/entropyFromFreq.Rd
man/FurlongDataSet-dash-class.Rd
man/initialize-comma-DDGraph-dash-method.Rd
man/plotSVMPerformance.Rd
man/mcX2CLoop.Rd
man/prob-dot-distr-dot-unif.Rd
man/operators-dash-DDGraph.Rd
man/svmFeatureSelectionLOOCV.Rd
man/makeNCPCRobustness.Rd
man/adjC-dot-toIDs.Rd
man/names-comma-CITestResult-dash-method.Rd
man/operators-dash-DDDataSet.Rd
man/formulaFalseNeg.Rd
man/DDGraphEdge-dash-class.Rd
man/toyExample.Rd
man/blockingNodes.Rd
man/datasetName-comma-DDDataSet-dash-method.Rd
man/independent-dot-contributions-dot-formula.Rd
man/NCPCRobustness-dash-class.Rd
man/plot-comma-DDGraph-comma-missing-dash-method.Rd
man/ncpc.Rd
man/show-comma-DDGraphEdge-dash-method.Rd
man/mcX2Test.Rd
man/DDGraph-dash-class.Rd
man/combinationsTest.Rd
man/plotPCalg.Rd
man/variableNames-comma-DDDataSet-dash-method.Rd
man/adjC-dot-condSetSize.Rd
man/convertPvalueToColorIndex.Rd
man/names-comma-DDDataSet-dash-method.Rd
man/graph-dot-to-dot-bn.Rd
man/is-dot-binary.Rd
man/mcMITest.Rd
man/estimateNetworkDistribution.Rd
man/predSVM.Rd
man/CITestResult-dash-class.Rd
man/ncpcResampling.Rd
man/toDDDataSet-comma-FurlongDataSet-dash-method.Rd
man/independent-dot-contributions-dot-formula-dot-mul.Rd
man/mcX2TestB50k.Rd
man/logseq.Rd
man/CITestResultVar.Rd
man/initialize-comma-DDDataSet-dash-method.Rd
man/pcalgNBR.Rd
man/adjC-dot-allVarNames.Rd
man/rawData-comma-DDDataSet-dash-method.Rd
man/chisq-dot-val.Rd
man/calculateNCPCRobustnessStats.Rd
R/dsep.R
R/methods-CITestResult.R
R/citest.R
R/methods-DDGraph.R
R/methods-DDGraphEdge.R
R/furlong.R
R/plot-colour.R
R/AllGenerics.R
R/plot.R
R/calcDependence.R
R/resampling.R
R/misc.R
R/other-algorithms.R
R/combinations.R
R/randomnet.R
R/AllClassses.R
R/methods-DDDataSet.R
R/ncpc.R
R/svm.R
vignettes/references.bib
vignettes/ddgraph.Rnw
build/vignette.rds
src/mcX2cloop.cpp
src/Makevars
src/Makevars.win
tests/test-all.R
inst/NEWS
inst/tests/test_DDDataSet.R
inst/tests/test_lake.R
inst/tests/test_functions.R
inst/tests/test_FurlongDataSet.R
inst/tests/test_NCPCRobustness.R
inst/tests/gold_standard/star-sm_0.2.txt
inst/tests/gold_standard/vm_0.2.txt
inst/tests/gold_standard/star-vm_sm_0.05.txt
inst/tests/gold_standard/meso_0.1.txt
inst/tests/gold_standard/star-sm_0.05.txt
inst/tests/gold_standard/star-meso_sm_0.2.txt
inst/tests/gold_standard/star-vm_0.05.txt
inst/tests/gold_standard/meso_sm_0.05.txt
inst/tests/gold_standard/star-meso_0.2.txt
inst/tests/gold_standard/vm_sm_0.1.txt
inst/tests/gold_standard/star-vm_sm_0.2.txt
inst/tests/gold_standard/sm_0.1.txt
inst/tests/gold_standard/meso_sm_0.1.txt
inst/tests/gold_standard/star-vm_0.1.txt
inst/tests/gold_standard/star-meso_0.05.txt
inst/tests/gold_standard/sm_0.2.txt
inst/tests/gold_standard/star-vm_sm_0.1.txt
inst/tests/gold_standard/meso_sm_0.2.txt
inst/tests/gold_standard/star-vm_0.2.txt
inst/tests/gold_standard/vm_sm_0.2.txt
inst/tests/gold_standard/star-meso_sm_0.05.txt
inst/tests/gold_standard/meso_0.05.txt
inst/tests/gold_standard/vm_0.05.txt
inst/tests/gold_standard/star-meso_sm_0.1.txt
inst/tests/gold_standard/star-meso_0.1.txt
inst/tests/gold_standard/vm_sm_0.05.txt
inst/tests/gold_standard/star-sm_0.1.txt
inst/tests/gold_standard/vm_0.1.txt
inst/tests/gold_standard/sm_0.05.txt
inst/tests/gold_standard/meso_0.2.txt
inst/tests/reports/this_is_where_test_results_go.txt
inst/doc/ddgraph.Rnw
inst/doc/ddgraph.pdf
inst/doc/ddgraph.R
inst/extdata/supplementary_table_8_training_set.txt
