mapEnrichmentToColors: Map enrichment values to colors...
In ddgraph: Distinguish direct and indirect interactions with Graphical Modelling
Description
Usage
Arguments
Details
Value
Description
Map enrichment values to colors
Usage
1
mapEnrichmentToColors(obj, palette, class.col, scale="auto")
Arguments
obj
an object of type DDGraph
palette
the color palette to use (by default Orange-Red)
class.col
the color to use for class labels, if applicable (by default light green)
scale
by how much to scale the -log10(p.value) when color coding: either a number of "auto" for automatic
Details
The enrichment of every variable is calculated during construction of DDGraph objects (in ncpc()).
Use this information to color code the node in the graph. By default the Orange-Red is used and shown the strength
of enrichment and depletion. No difference is made for enriched/depleted variables.
Value
the p values color-coded by convertPvalueToColorIndex() function
ddgraph documentation built on Nov. 17, 2017, 10:50 a.m.
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Description Usage Arguments Details Value
Description
Map enrichment values to colors
Usage
1 | mapEnrichmentToColors(obj, palette, class.col, scale="auto")
|
Arguments
obj |
an object of type DDGraph |
palette |
the color palette to use (by default Orange-Red) |
class.col |
the color to use for class labels, if applicable (by default light green) |
scale |
by how much to scale the -log10(p.value) when color coding: either a number of "auto" for automatic |
Details
The enrichment of every variable is calculated during construction of DDGraph objects (in ncpc()).
Use this information to color code the node in the graph. By default the Orange-Red is used and shown the strength
of enrichment and depletion. No difference is made for enriched/depleted variables.
Value
the p values color-coded by convertPvalueToColorIndex() function
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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