mesoCont is a list of objects of class
It has been generated with the following code:
mesoCont <- toDDDataSet(readFurlongData(), prettyNames=TRUE, convertToBinary=FALSE)
The dataset represents original continuous binding signal for 5 transcription factors (TFs) at 1-5 time points during embryonic mesoderm development in Drosophila Melanogaster (Zinzen et al, 2009). The original data is retained (from Supplementary Table 8 of the paper).
The list contains 7 objects of type
DDDataSet for 7 cis-regulatory
module (CRM) classes. These classes are: neg (negative class of CRMs), Meso (CRMs active in
early mesoderm), Meso_SM (CRMs active in early mesoderm and somatic muscle), VM (visceral
muscle), SM (somatic muscle), VM_SM (active in both somatic and visceral muscle) and CM
(active in cardiac muscle).
Robert P. Zinzen et al., "Combinatorial binding predicts spatio-temporal cis-regulatory activity," Nature 462, no. 7269 (November 5, 2009): 65-70.
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