mesoCont: A list of continuous 'DDDataSet' objects.

In ddgraph: Distinguish direct and indirect interactions with Graphical Modelling

Description

mesoCont is a list of objects of class DDDataSet. It has been generated with the following code:

mesoCont <- toDDDataSet(readFurlongData(), prettyNames=TRUE, convertToBinary=FALSE)

Usage

data(mesoCont)

Details

The dataset represents original continuous binding signal for 5 transcription factors (TFs) at 1-5 time points during embryonic mesoderm development in Drosophila Melanogaster (Zinzen et al, 2009). The original data is retained (from Supplementary Table 8 of the paper).

The list contains 7 objects of type DDDataSet for 7 cis-regulatory module (CRM) classes. These classes are: neg (negative class of CRMs), Meso (CRMs active in early mesoderm), Meso_SM (CRMs active in early mesoderm and somatic muscle), VM (visceral muscle), SM (somatic muscle), VM_SM (active in both somatic and visceral muscle) and CM (active in cardiac muscle).

References

Robert P. Zinzen et al., "Combinatorial binding predicts spatio-temporal cis-regulatory activity," Nature 462, no. 7269 (November 5, 2009): 65-70.

See Also

mesoBin.

Examples

data(mesoCont)
names(mesoCont)
class(mesoCont$VM)

ddgraph documentation built on Nov. 17, 2017, 10:50 a.m.