toDDDataSet-comma-FurlongDataSet-dash-method: DDDataSet object from FurlongDataSet

In ddgraph: Distinguish direct and indirect interactions with Graphical Modelling

Description

Make the DDDataSet objects by selecting different tissues

Usage

## S4 method for signature 'FurlongDataSet'
toDDDataSet(obj, tissues=c(), convertToBinary=TRUE, prettyNames=FALSE, ...)

Arguments

obj	the FurlongDataSet object
tissues	tissue names for which DDDataSet objects should be generated (default to all available tissues)
convertToBinary	if to convert the signal into binary values
prettyNames	if to make the names pretty, e.g. twi_2.4 -> Twi 2-4h
...	unused

Value

either single DDDataSet object, or a list of them (depending on number of selected tissues)

Examples

# load binarized data with prettified names
all.data <- toDDDataSet(readFurlongData(), prettyNames=TRUE)
# load continuous data with original names
all.data <- toDDDataSet(readFurlongData(), convertToBinary=FALSE)

ddgraph documentation built on Nov. 17, 2017, 10:50 a.m.