plot-comma-DDGraph-comma-missing-dash-method: Plot DDGraphs using RGraphviz...

In ddgraph: Distinguish direct and indirect interactions with Graphical Modelling

Description

Plot DDGraphs using RGraphviz

Usage

## S4 method for signature 'DDGraph,missing'
plot(x, y, ..., col=NULL, legend=FALSE, only.legend=FALSE, plot.class=TRUE,
    class.label=datasetName(x@dataset), ci.symbol="dot",
    plot.pvals=TRUE, pvals.format=function(x) sprintf("%.2f", x),
    pvals.fontsize=12, main=NULL)

Arguments

x	DDGraph object
y	unusued
col	specifies the colors to be used to color nodes. Can be any of the following: named vector of colors logical value (TRUE = nodes colored in default 0.1 to 1e-3 range, FALSE = no node coloring) - only available for binary datasets. list of parameters to pass to mapEnrichmentToColorsDual(), valid pameters are: "palette.pos", "palette.neg", "class.col", "scale", "max.color.index"
legend	if to plot the color legend
only.legend	if to plot only the legend
plot.class	if to plot class labels node
class.label	if plot.class=TRUE the label of the class node
plot.pvals	if to plot p values on top of edges
ci.symbol	the RGraphviz arrowtail/head symbol name for conditional independence tests
pvals.format	a function to format the p values to be displayed on directed edges
pvals.fontsize	the size of the font for p values
main	main title
...	other parameters passed to layoutGraph()

Examples

## Not run: 
# load data
data(mesoBin)
# make DDGraph
g <- ncpc(mesoBin$Meso)

# default plot
plot(g)

# use colours
plot(g, col=TRUE)

## End(Not run)

ddgraph documentation built on Nov. 17, 2017, 10:50 a.m.