Files in destiny
Creates diffusion maps
NEWS
NAMESPACE
DESCRIPTION
LICENSE
src/utils.cpp
src/censoring.cpp
src/RcppExports.cpp
src/Makevars
src/exports.h
src/utils.h
data/guo.rda
data/guo_norm.rda
R/destiny-package.r
R/diffusionmap-plotting.r
R/sigmas.r
R/plothelpers.r
R/aaa.r
R/sigmas-plotting.r
R/dpt-methods.r
R/colorlegend.r
R/find_dm_k.r
R/RcppExports.R
R/dataset-helpers.r
R/diffusionmap.r
R/rankcor.r
R/dpt-branching.r
R/expressionset-helpers.r
R/gene-relevance-plotting-rank.r
R/s4-unions.r
R/dpt-plotting.r
R/compat.r
R/accessor-generics.r
R/guo-data.r
R/gene-relevance.r
R/eig_decomp.r
R/utils.r
R/censoring.r
R/gene-relevance-plotting-gr-map.r
R/cube_helix.r
R/methods-extraction.r
R/l_which.r
R/gene-relevance-methods.r
R/diffusionmap-methods.r
R/dpt.r
R/dpt-methods-matrix.r
R/projection-dist.r
R/methods-update.r
R/dpt-helpers.r
R/predict.r
R/gene-relevance-plotting.r
R/methods-coercion.r
R/knn.r
R/diffusionmap-methods-accession.r
R/dist-matrix-coerce.r
R/gene-relevance-plotting-differential-map.r
docs/index.html
docs/pkgdown.yml
docs/LICENSE-text.html
docs/docsearch.js
docs/404.html
docs/docsearch.css
docs/authors.html
docs/pkgdown.js
docs/link.svg
docs/pkgdown.css
docs/reference/updateObject-methods.html
docs/reference/plot.DPT.html
docs/reference/plot.Sigmas-1.png
docs/reference/cube_helix-1.png
docs/reference/DiffusionMap-class.html
docs/reference/plot.DiffusionMap.html
docs/reference/colorlegend-1.png
docs/reference/index.html
docs/reference/plot.DPT-3.png
docs/reference/l_which.html
docs/reference/guo.html
docs/reference/plot.DPT-4.png
docs/reference/Gene-Relevance-plotting-2.png
docs/reference/plot.DPT-2.png
docs/reference/DPT-matrix-methods-1.png
docs/reference/ExpressionSet-helpers.html
docs/reference/DPT-methods.html
docs/reference/find_dm_k-1.png
docs/reference/destiny-3.png
docs/reference/DPT.html
docs/reference/find_dm_k-2.png
docs/reference/destiny-deprecated.html
docs/reference/destiny-2.png
docs/reference/find_tips.html
docs/reference/geom_voronoi-1.png
docs/reference/Gene-Relevance-plotting-3.png
docs/reference/cube_helix.html
docs/reference/random_root.html
docs/reference/find_tips-1.png
docs/reference/Gene-Relevance-methods.html
docs/reference/coercions.html
docs/reference/eig_decomp.html
docs/reference/plot.Sigmas.html
docs/reference/geom_voronoi.html
docs/reference/updateObject-method.html
docs/reference/geom_voronoi-2.png
docs/reference/DPT-matrix-methods.html
docs/reference/Sigmas-class.html
docs/reference/plot.DPT-1.png
docs/reference/plot.DiffusionMap-1.png
docs/reference/find_dm_k.html
docs/reference/destiny-generics-1.png
docs/reference/DiffusionMap-accessors-1.png
docs/reference/Gene-Relevance-plotting.html
docs/reference/knn.html
docs/reference/find_sigmas-1.png
docs/reference/projection_dist.html
docs/reference/find_sigmas.html
docs/reference/Gene-Relevance.html
docs/reference/DiffusionMap-methods.html
docs/reference/Gene-Relevance-plotting-1.png
docs/reference/cube_helix-2.png
docs/reference/DiffusionMap-accessors.html
docs/reference/Gene-Relevance-plotting-4.png
docs/reference/colorlegend.html
docs/reference/destiny-1.png
docs/reference/destiny-generics.html
docs/reference/dm_predict-1.png
docs/reference/extractions.html
docs/reference/destiny.html
docs/reference/dm_predict.html
docs/reference/DPT-methods-1.png
demo/destiny.r
demo/00Index
vignettes/Gene-Relevance.ipynb
vignettes/.install_extras
vignettes/destiny_processors.py
vignettes/Gene-Relevance.ipynbmeta
vignettes/DPT.ipynbmeta
vignettes/bibliography.bib
vignettes/tidyverse.ipynb
vignettes/mmc4.xls
vignettes/tidyverse.ipynbmeta
vignettes/Global-Sigma.ipynbmeta
vignettes/Diffusion-Map-recap.ipynbmeta
vignettes/Diffusion-Maps.ipynb
vignettes/Diffusion-Maps.ipynbmeta
vignettes/mmc6.xls
vignettes/DPT.ipynb
vignettes/destiny.tplx
vignettes/Diffusion-Map-recap.ipynb
vignettes/destiny-base.tplx
vignettes/Global-Sigma.ipynb
vignettes/destiny-bib.tplx
man/projection_dist.Rd
man/dm_predict.Rd
man/plot.Sigmas.Rd
man/knn.Rd
man/ExpressionSet-helpers.Rd
man/DPT-matrix-methods.Rd
man/Gene-Relevance-methods.Rd
man/Sigmas-class.Rd
man/Gene-Relevance.Rd
man/destiny.Rd
man/DiffusionMap-class.Rd
man/guo.Rd
man/find_dm_k.Rd
man/Gene-Relevance-plotting.Rd
man/DPT-methods.Rd
man/eig_decomp.Rd
man/find_sigmas.Rd
man/updateObject-methods.Rd
man/colorlegend.Rd
man/destiny-generics.Rd
man/random_root.Rd
man/destiny-deprecated.Rd
man/plot.DPT.Rd
man/DiffusionMap-accessors.Rd
man/coercions.Rd
man/plot.DiffusionMap.Rd
man/DiffusionMap-methods.Rd
man/extractions.Rd
man/cube_helix.Rd
man/DPT.Rd
man/find_tips.Rd
man/l_which.Rd
tests/testthat.R
tests/testthat/test_ggplot.r
tests/testthat/test_utils.r
tests/testthat/test_distances.r
tests/testthat/test_dataset_types.r
tests/testthat/test_knn.r
tests/testthat/test_basic.r
tests/testthat/test_pca.r
tests/testthat/test_gr.r
inst/CITATION
inst/doc/Gene-Relevance.ipynb
inst/doc/Gene-Relevance.pdf
inst/doc/destiny_processors.py
inst/doc/Gene-Relevance.ipynbmeta
inst/doc/DPT.ipynbmeta
inst/doc/Global-Sigma.pdf
inst/doc/bibliography.bib
inst/doc/tidyverse.ipynb
inst/doc/Global-Sigma.r
inst/doc/tidyverse.ipynbmeta
inst/doc/Global-Sigma.ipynbmeta
inst/doc/Diffusion-Maps.pdf
inst/doc/Diffusion-Map-recap.r
inst/doc/Diffusion-Map-recap.ipynbmeta
inst/doc/DPT.r
inst/doc/DPT.pdf
inst/doc/Diffusion-Maps.ipynb
inst/doc/Diffusion-Maps.ipynbmeta
inst/doc/DPT.ipynb
inst/doc/destiny.tplx
inst/doc/Diffusion-Map-recap.ipynb
inst/doc/destiny-base.tplx
inst/doc/Global-Sigma.ipynb
inst/doc/Diffusion-Maps.r
inst/doc/destiny-bib.tplx
inst/doc/Diffusion-Map-recap.pdf
inst/doc/tidyverse.r
inst/doc/tidyverse.pdf
inst/doc/Gene-Relevance.r
