bedToGRanges: Read a file and make a GRanges object
In diffloop: Identifying differential DNA loops from chromatin topology data
Description
Usage
Arguments
Details
Value
Examples
Description
bedToGRanges takes a string corresponding to a file
and creates a GRanges object, retaining meta-data
Usage
1
2
3
4
bedToGRanges(file)
## S4 method for signature 'character'
bedToGRanges(file)
Arguments
file
A string specifiying .bed file location
Details
Useful function to read in a .bed file to create a GRanges object
where the meta-data is presevered. Useful for later functions like
annotateAnchors
Value
A GRanges object
Examples
1
2
3
#Read in CTCF Jurkat peaks in
ctcf_j <- system.file('extdata','Jurkat_CTCF_chr1.narrowPeak',package = 'diffloop')
ctcf <- bedToGRanges(ctcf_j)
diffloop documentation built on Nov. 8, 2020, 5:48 p.m.
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Description Usage Arguments Details Value Examples
Description
bedToGRanges takes a string corresponding to a file
and creates a GRanges object, retaining meta-data
Usage
1 2 3 4 | bedToGRanges(file)
## S4 method for signature 'character'
bedToGRanges(file)
|
Arguments
file |
A string specifiying .bed file location |
Details
Useful function to read in a .bed file to create a GRanges object
where the meta-data is presevered. Useful for later functions like
annotateAnchors
Value
A GRanges object
Examples
1 2 3 | #Read in CTCF Jurkat peaks in
ctcf_j <- system.file('extdata','Jurkat_CTCF_chr1.narrowPeak',package = 'diffloop')
ctcf <- bedToGRanges(ctcf_j)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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