loopDistancePlot: Visualize proportion of loops at distances
In diffloop: Identifying differential DNA loops from chromatin topology data

loopDistancePlot takes a loops object plots the individual samples based on the proportion of PET counts at various distances

loopDistancePlot(dlo)

## S4 method for signature 'loops'
loopDistancePlot(dlo)

dlo

A loops object

Distances for the loops are taken from the rowData slot.

A ggplot2 plot

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rda<-paste(system.file('rda',package='diffloop'),'loops.small.rda',sep='/')
load(rda)
p1 <- loopDistancePlot(loops.small)

diffloop documentation built on Nov. 8, 2020, 5:48 p.m.

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