loops-class: A class to represent ChIA-PET interaction data and...
In diffloop: Identifying differential DNA loops from chromatin topology data
Description
A class to represent ChIA-PET interaction data and annotations
Slots
anchorsA GRanges object describing loop anchor locations
interactionsA matrix. Each row is an interaction between two anchors
countsA matrix with the number paired-end reads per loop per sample
colDataA data.frame with features (colums) for each sample (rows)
rowDataA data.frame with features (columns) for each loop (rows)
diffloop documentation built on Nov. 8, 2020, 5:48 p.m.
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Description
A class to represent ChIA-PET interaction data and annotations
Slots
anchorsA GRanges object describing loop anchor locations
interactionsA matrix. Each row is an interaction between two anchors
countsA matrix with the number paired-end reads per loop per sample
colDataA data.frame with features (colums) for each sample (rows)
rowDataA data.frame with features (columns) for each loop (rows)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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