plotMA.se: plotMA.se Function to make MA plot.

Description Usage Arguments Details Value Author(s) References Examples

View source: R/plotMA.R

Description

This function generates MA plot.

Usage

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plotMA.se(se, samplesA, samplesB, scale = NULL,
xlab = 'A', ylab = 'M', ...)

Arguments

se

A SummarizedExperiment object.

samplesA

Either a character vector, identifying sample set A by either replicate name or sample name, or a numerical vector giving the columns of data in the object that forms sample set A.

samplesB

Either a character vector, identifying sample set B by either replicate name or sample name, or a numerical vector giving the columns of data in the object that forms sample set B.

scale

If given, defines the scale on which the log-ratios will be plotted.

xlab

Label for the X-axis. Defaults to 'A'.

ylab

Label for the Y-axis. Defaults to 'M'.

...

Any other parameters to be passed to the plot function.

Details

This function makes MA plot from SummExperiment object.

Value

Returns MA plot.

Author(s)

AJ Vaestermark, JR Walters.

References

The 'doseR' package, 2018 (in press).

Examples

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data(hmel.se)
plotMA.se(se, samplesA = 'Male', samplesB = 'Female')

doseR documentation built on Nov. 8, 2020, 5:37 p.m.