getLibsizes3: getLibsizes3 Get Lib Sizes.

Description Usage Arguments Value Author(s) References Examples

View source: R/getLibsizes3.R

Description

getLibsizes3 method for SummarizedExp class object, derived from getLibsizes2

Usage

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getLibsizes3(se, subset = NULL,
estimationType = c("quantile", "total",
"edgeR"),quantile = 0.75, ...)

Arguments

se

A SummarizedExperiment object.

subset

Value

estimationType

e.g. quantile, total, edgeR.

quantile

A quantile, expressed as e.g. 0.75.

...

Passthrough arguments.

Value

Libsize value

Author(s)

AJ Vaestermark, JR Walters.

References

The "doseR" package, 2018 (in press).

Examples

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data(hmel.se)
getLibsizes3(se)

doseR documentation built on May 6, 2019, 3:54 a.m.