getLibsizes3: getLibsizes3 Get Lib Sizes.

In doseR: doseR

Description

getLibsizes3 method for SummarizedExp class object, derived from getLibsizes2

Usage

getLibsizes3(se, subset = NULL,
estimationType = c("quantile", "total",
"edgeR"),quantile = 0.75, ...)

Arguments

se	A SummarizedExperiment object.
subset	Value
estimationType	e.g. quantile, total, edgeR.
quantile	A quantile, expressed as e.g. 0.75.
...	Passthrough arguments.

Value

Libsize value

Author(s)

AJ Vaestermark, JR Walters.

References

The "doseR" package, 2018 (in press).

Examples

data(hmel.se)
getLibsizes3(se)

doseR documentation built on Nov. 8, 2020, 5:37 p.m.