test_diffs: test_diffs Statistics function to summarize expression data...
In doseR: doseR

generateStats is a summary function used on various expression data, using ratios between selected treatments.

1 2	test_diffs(se, groupings= NULL, treatment1=NULL, treatment2=NULL, mode_mean=TRUE, LOG2=TRUE)

`se`	A SummarizedExperiment object.
`groupings`	A grouping (annotation column); groupings="annotation.ZA".
`treatment1`	Symbol, treatment 1.
`treatment2`	Symbol, treatment 2.
`mode_mean`	Boolean, Calculate RowMeans or RowMedians.
`LOG2`	Boolean, Calculate LOG2.

This function completes summary statistics of the expression of the supplied SummarizedExperiment object.

Returns an invisible list of summary statistics, kruskal test and raw data of an object, using ratios between selected treatments.

AJ Vaestermark, JR Walters.

The "doseR" package, 2018 (in press).

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data(hmel.se)
test_diffs(se, groupings='annotation.ZA',treatment1="Male",
treatment2="Female" )

doseR documentation built on Nov. 8, 2020, 5:37 p.m.

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