Files in dpeak
dPeak (Deconvolution of Peaks in ChIP-seq Analysis)
README.md
dpeak documentation built on Nov. 8, 2020, 7:45 p.m.
NEWS
NAMESPACE
DESCRIPTION
build/vignette.rds
src/Makevars.win
src/stack.cpp
src/score.cpp
src/Makevars
src/dlength.cpp
src/normalize.cpp
src/ismaxZ0.cpp
src/fraglen.cpp
src/samp.cpp
data/exampleData.RData
R/methods_DpeakFit.R
R/base_lineStrandData.R
R/dpeakFit.R
R/base_selectModel.R
R/AllGenerics.R
R/base_combineModelPET.R
R/base_deconCoreSET.R
R/base_stackFragment.R
R/base_deconInitPET.R
R/base_bg_SET.R
R/methods_DpeakData.R
R/base_combineModelSET.R
R/dpeakRead.R
R/base_deconWrapper.R
R/base_plotFit.R
R/base_deconInitSET.R
R/methods_DpeakMotif.R
R/dpeakMotif.R
R/base_deconCorePET.R
R/AllClasses.R
R/base_generateFragment.R
R/base_export.R
R/base_plotBIC.R
R/base_cpp_call.R
R/base_plotStrandData.R
R/base_loglikPET.R
R/base_plotGOF.R
R/base_constructExtRead.R
R/base_loglikSET.R
vignettes/dataplot_strand.eps
vignettes/resultplot_strand.pdf
vignettes/resultplot_strand.eps
vignettes/GOF.eps
vignettes/resultplot_combined.eps
vignettes/resultplot_combined.pdf
vignettes/examplePeak.txt
vignettes/dataplot_combined.eps
vignettes/dpeak-example.Rnw
vignettes/dataplot_strand.pdf
vignettes/dataplot_combined.pdf
vignettes/GOF.pdf
man/exportPlot.Rd
man/exportPeakList.Rd
man/DpeakMotif-class.Rd
man/dpeak-package.Rd
man/printEmpty.Rd
man/dpeakRead.Rd
man/DpeakFit-class.Rd
man/dpeakMotif.Rd
man/DpeakData-class.Rd
man/dpeakFit.Rd
man/exampleData.Rd
man/dpeak-internal.Rd
inst/doc/dpeak-example.pdf
inst/doc/dpeak-example.R
inst/doc/dpeak-example.Rnw
inst/Perl/extract_coord_SET.pl
inst/Perl/extract_coord_PET.pl
