API for edge
Extraction of Differential Gene Expression
| Global functions | |
|---|---|
| apply_jackstraw | Man page |
| apply_jackstraw,deSet-method | Man page |
| apply_qvalue | Man page |
| apply_qvalue,deSet-method | Man page |
| apply_snm | Man page |
| apply_snm,deSet-method | Man page |
| apply_sva | Man page |
| apply_sva,deSet-method | Man page |
| betaCoef | Man page |
| betaCoef,deFit-method | Man page |
| bootstrap | Source code |
| build_models | Man page Source code |
| build_study | Man page Source code |
| createSet | Source code |
| deFit-class | Man page |
| deFitCheck | Source code |
| deSet | Man page |
| deSet,ExpressionSet-method | Man page |
| deSet-class | Man page |
| deSetCheck | Source code |
| edge | Man page |
| edge-package | Man page |
| endotoxin | Man page |
| fitFDist | Source code |
| fitFull | Man page |
| fitFull,deFit-method | Man page |
| fitNull | Man page |
| fitNull,deFit-method | Man page |
| fit_models | Man page |
| fit_models,deSet-method | Man page |
| fit_wmodels | Source code |
| fullMatrix | Man page |
| fullMatrix,deSet-method | Man page |
| fullMatrix<- | Man page |
| fullMatrix<-,deSet-method | Man page |
| fullModel | Man page |
| fullModel,deSet-method | Man page |
| fullModel<- | Man page |
| fullModel<-,deSet-method | Man page |
| gibson | Man page |
| individual | Man page |
| individual,deSet-method | Man page |
| individual<- | Man page |
| individual<-,deSet-method | Man page |
| kidney | Man page |
| kl | Source code |
| kl_clust | Man page |
| kl_clust,deSet,deFit-method | Man page |
| kl_clust,deSet,missing-method | Man page |
| klmod | Source code |
| lrt | Man page |
| lrt,deSet,deFit-method | Man page |
| lrt,deSet,missing-method | Man page |
| lrtStat | Source code |
| mod.df | Source code Source code |
| mod.parms | Source code |
| null | Source code |
| nullMatrix | Man page |
| nullMatrix,deSet-method | Man page |
| nullMatrix<- | Man page |
| nullMatrix<-,deSet-method | Man page |
| nullModel | Man page |
| nullModel,deSet-method | Man page |
| nullModel<- | Man page |
| nullModel<-,deSet-method | Man page |
| odp | Man page |
| odp,deSet,deFit-method | Man page |
| odp,deSet,missing-method | Man page |
| odp.score | Source code |
| odpStat | Source code |
| projMatrix | Source code |
| qvalueObj | Man page |
| qvalueObj,deSet-method | Man page |
| qvalueObj<- | Man page |
| qvalueObj<-,deSet-method | Man page |
| resFull | Man page |
| resFull,deFit-method | Man page |
| resNull | Man page |
| resNull,deFit-method | Man page |
| rescale | Source code |
| rm.zero.cols | Source code |
| sType | Man page |
| sType,deFit-method | Man page |
| show | Man page |
| show,deFit-method | Man page |
| show,deSet-method | Man page |
| squeezeVar | Source code |
| summary | Man page |
| summary,deFit-method | Man page |
| summary,deSet-method | Man page |
| trigammaInverse | Source code |
| updateOldExpSet | Source code |
