dotplot: dotplot

In enrichplot: Visualization of Functional Enrichment Result

Description

dotplot for enrichment result

Usage

dotplot(object, ...)

## S4 method for signature 'enrichResult'
dotplot(
  object,
  x = "GeneRatio",
  color = "p.adjust",
  showCategory = 10,
  size = NULL,
  split = NULL,
  font.size = 12,
  title = "",
  label_format = 30,
  ...
)

## S4 method for signature 'gseaResult'
dotplot(
  object,
  x = "GeneRatio",
  color = "p.adjust",
  showCategory = 10,
  size = NULL,
  split = NULL,
  font.size = 12,
  title = "",
  label_format = 30,
  ...
)

Arguments

object	input object
...	additional parameters
x	variable for x-axis, one of 'GeneRatio' or 'Count'
color	variable that used to color enriched terms, e.g. pvalue, p.adjust or qvalue
showCategory	number of enriched terms to display
size	variable that used to scale the sizes of categories
split	separate result by 'category' variable
font.size	font size
title	plot title
label_format	a numeric value sets wrap length, alternatively a custom function to format axis labels. by default wraps names longer that 30 characters

Value

plot

Author(s)

guangchuang yu

Examples

library(DOSE)
data(geneList)
de <- names(geneList)[1:100]
x <- enrichDO(de)
dotplot(x)

Example output

DOSE v3.16.0  For help: https://guangchuangyu.github.io/software/DOSE

If you use DOSE in published research, please cite:
Guangchuang Yu, Li-Gen Wang, Guang-Rong Yan, Qing-Yu He. DOSE: an R/Bioconductor package for Disease Ontology Semantic and Enrichment analysis. Bioinformatics 2015, 31(4):608-609

wrong orderBy parameter; set to default `orderBy = "x"`

enrichplot documentation built on Jan. 30, 2021, 2:01 a.m.