goplot: goplot

Description Usage Arguments Value Author(s)

Description

plot induced GO DAG of significant terms

Usage

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goplot(
  x,
  showCategory = 10,
  color = "p.adjust",
  layout = "sugiyama",
  geom = "text",
  ...
)

## S4 method for signature 'enrichResult'
goplot(
  x,
  showCategory = 10,
  color = "p.adjust",
  layout = "sugiyama",
  geom = "text",
  ...
)

## S4 method for signature 'gseaResult'
goplot(
  x,
  showCategory = 10,
  color = "p.adjust",
  layout = "sugiyama",
  geom = "text",
  ...
)

goplot.enrichResult(
  x,
  showCategory = 10,
  color = "p.adjust",
  layout = "sugiyama",
  geom = "text",
  ...
)

Arguments

x

enrichment result.

showCategory

number of enriched terms to display

color

variable that used to color enriched terms, e.g. pvalue, p.adjust or qvalue

layout

layout of the map

geom

label geom, one of 'label' or 'text'

...

additional parameter

Value

ggplot object

Author(s)

guangchuang yu


enrichplot documentation built on Jan. 30, 2021, 2:01 a.m.