ridgeplot: ridgeplot

In enrichplot: Visualization of Functional Enrichment Result

Description

ridgeline plot for GSEA result

Usage

ridgeplot(
  x,
  showCategory = 30,
  fill = "p.adjust",
  core_enrichment = TRUE,
  label_format = 30
)

## S4 method for signature 'gseaResult'
ridgeplot(
  x,
  showCategory = 30,
  fill = "p.adjust",
  core_enrichment = TRUE,
  label_format = 30
)

ridgeplot.gseaResult(
  x,
  showCategory = 30,
  fill = "p.adjust",
  core_enrichment = TRUE,
  label_format = 30
)

Arguments

x	gseaResult object
showCategory	number of categories for plotting
fill	one of "pvalue", "p.adjust", "qvalue"
core_enrichment	whether only using core_enriched genes
label_format	a numeric value sets wrap length, alternatively a custom function to format axis labels. by default wraps names longer that 30 characters

Value

ggplot object

Author(s)

Guangchuang Yu

Examples

library(DOSE)
data(geneList)
x <- gseDO(geneList)
ridgeplot(x)

enrichplot documentation built on Jan. 30, 2021, 2:01 a.m.