Man pages for epiNEM
epiNEM

AddLogicGatesAdd logic.
createExtendedAdjacencyCreate an extended adjacency matrix
CreateRandomGraphCreate a random graph
CreateTopologyCreate Topology.
epiAnnoGate visualisation.
epiNEMEpistatic NEMs - main function.
epiScreenAnalyse large double knock-out screen.
ExtendTopologyExtending topology of normal "nem"
GenerateDataGenerate data from extended model.
HeatmapOPHeatmap.
MLLEvaluation of graphs
plot.epiNEMPlot pathway.
plot.epiScreenPlot screen.
plot.epiSimPlot simulations.
sameith_GOgraph-based GO similarity scores, string GO annotations for...
sameith_stringsig. of string interaction scores for Sameith et al., 2015...
samscreenExample data: epiNEM results for the Sameith et al., 2015...
simExample data: simulation results
SimEpiNEMCompare algorithms.
wageningen_GOgraph-based GO similarity scores, string GO annotations for...
wageningen_stringsig. of string interaction scores for van Wageningen et al.,...
wagscreenExample data: epiNEM results for the Wageningen et al., 2010...
epiNEM documentation built on Nov. 4, 2018, 6:02 p.m.