GenerateData: Generate data from extended model.
In epiNEM: epiNEM

Description Usage Arguments Value Author(s) See Also Examples

Given a model created from CreateTopology and ExtendTopology, this function creeates acorresponding artificial data matrix, which is used as a ground truth for simulation studies.

1	GenerateData(model, extTopology, FPrate, FNrate, replicates)

`model`	model of a topology from CreateTopology
`extTopology`	extended topology
`FPrate`	false positive rate
`FNrate`	false negative rate
`replicates`	number of replicates

data matrix with effect reporters as rows and knock-downs (including double kock-downs) as columns.

Madeline Diekmann

CreateTopology

topology <-
CreateTopology(3, 1, force = TRUE)
topology <-
unlist(unique(topology), recursive = FALSE)
extTopology <-
ExtendTopology(topology$model, 100)
sortedData <-
GenerateData(topology$model, extTopology, 0.05, 0.13, 3)