CreateExtendedAdjacency: Create an extended adjacency matrix

In epiNEM: epiNEM

Description

extend adjacency matrices taking cycles and logics into account. For every given start state, the final state is computed yu using BoolNet.

Usage

CreateExtendedAdjacency(network, mutants, experiments)

Arguments

network	network created by BoolNet from file
mutants	vector of single knockouts
experiments	vector of all knockouts

Value

extended adjacency matrix

Examples

library(BoolNet)
data(cellcycle)
extModel <- CreateExtendedAdjacency(cellcycle,
c(cellcycle$genes, "CycD.Rb"), cellcycle$genes)

Example output

epiNEM documentation built on Nov. 8, 2020, 6:51 p.m.