EpivizNavigation-class: Data container for an Epiviz navigation component.

In epivizrChart: R interface to epiviz web components

Description

Data container for an Epiviz navigation component.

Fields

gene

(character) Gene

geneInRange

(character) Nearest Gene in range.

parent

An object of class EpivizEnvironment where navigation is appended.

Methods

add_genome(genome, type = "gene_info", datasource_name = NULL)

Add a genome to the view, and a genes-track.

genome

annotation object. eg. Homo.sapiens

clone_charts(charts)

Clone EpivizCharts and append to navigation. Each chart must already exist in the navigation's data manager, otherwise an error will occur when attempting to intialize using their measurements

charts

list of EpivizCharts whose data exists in the navigation's data manager

get_attributes()

Get attributes for rendering chart

get_component_type()

Get component type for prefix of random id generator

get_gene()

Get gene

get_geneInRange()

Get gene in range

get_name()

Get name of Epiviz Web Component

render_component(shiny = FALSE)

Render to html

shiny

if rendering component in a shiny environment

set_gene(gene)

Set gene

set_geneInRange(gene)

Set step ratio

epivizrChart documentation built on Nov. 8, 2020, 8:02 p.m.