plot-EpivizEnvironment-ANY-method: Generic methods to plot charts and add navigation regions

In epivizrChart: R interface to epiviz web components

Description

Generic methods to plot charts and add navigation regions

Usage

## S4 method for signature 'EpivizEnvironment,ANY'
plot(x, y, ...)

Arguments

x	an object of type EpivizEnvironment or EpivizNavigation
y	a genomic data object
...	other parameters for the plot method

Examples

## Not run: 
library(epivizrChart)
library(Homo.sapiens)
require(magrittr)

# example data set
data(sumexp)
# create an environment element
epivizEnv <- epivizEnv()

# chain and add navigation regions and plots.
epivizEnv %>% 
plot(sumexp, datasource_name="sumExp", columns=c("cancer", "normal")) %>% 
append_region(chr="chr11", start=118000000, end=121000000) %>% 
plot(sumexp, datasource_name="sumExp", columns=c("normal", "cancer"))
epivizEnv

## End(Not run)

epivizrChart documentation built on Nov. 8, 2020, 8:02 p.m.