explorase: GUI for exploratory data analysis of systems biology data

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explore and analyze *omics data with R and GGobi

Author
Michael Lawrence, Eun-kyung Lee, Dianne Cook, Jihong Kim, Hogeun An, and Dongshin Kim
Date of publication
None
Maintainer
Michael Lawrence <michafla@gene.com>
License
GPL-2
Version
1.38.0
URLs

View on Bioconductor

Man pages

exp-addEntityType-vx
Add an entity type
exp-addFilterRule-rn
Add a filter rule
exp_bioc
ExpressionSet Integration
exp-calcAngleDist-31
Caclulate angle distance
exp-calcCanberraDist
Calculate Canberra distance
exp-calcCorrelationDist-45
Calculate correlation distance
exp-calcDiff-y4
Calculate difference
exp-calcEuclideanDist-dn
Calculate Euclidean distance
exp-calcMahalanobisDist-r1
Calculate Mahalanobis distance
exp-calcResiduals-ps
Calculate residuals
exp-calcZeroCorDist-by
Calculate zero-correlation distance
exp-close
Close exploRase
exp-colorEntities-1h
Coloring entities
exp-dataset-6l
Get experimental data
exp-designFactors-72
Get the exp. design factors
exp-designFrame-d0
Get the exp. design
exp-designSelection-5s
Get selected conditions
exp-entitiesInList-df
Get the entities in a list
exp-entityFrame-4j
Get entity metadata
exp-entitySelection-11
Get selected entities
exp-entityType-69
Get the current entity type
exp-entityTypes-9e
Get all entity types
exp-filterRules-vt
Get filter rules
exp-findPatterns-yw
Find Patterns
exp-ggobi-69
Get the GGobi session
exp-isRunning-fo
Check whether exploRase is running
exp-listFrame-gp
Get entity lists
exp-listSelection
Get selected lists
exp-loadData-bo
Load experimental data
exp-loadDesign-35
Load experimental design
exp-loadFiles-1w
Load files
exp-loadInfo-gk
Load entity metadata
exp-loadLists-pr
Load entity lists
exp-loadProject-1g
Load a project
explorase
Start exploRase
exp-newList-bs
Create an entity list
exp-removeFilterRules-1i
Remove filter rules
exp-showClustering-b7
Show a hierarchical clustering
exp-showPatterns-bh
Show patterns
exp-showResults-sk
Show analysis results
exp-toggleFilterRules-ts
Toggle filter rules

Files in this package

explorase/.BBSoptions
explorase/DESCRIPTION
explorase/NAMESPACE
explorase/R
explorase/R/atgs.R
explorase/R/bioc.R
explorase/R/brush.R
explorase/R/constants.R
explorase/R/data.R
explorase/R/datamodels.R
explorase/R/design.R
explorase/R/difference.R
explorase/R/entities.R
explorase/R/explorase.R
explorase/R/fcmodeler.R
explorase/R/filter.R
explorase/R/ggobi.R
explorase/R/ggtree.R
explorase/R/globals.R
explorase/R/io.R
explorase/R/lists.R
explorase/R/metnet.R
explorase/R/modeling.R
explorase/R/networks.R
explorase/R/patterns.R
explorase/R/tasks.R
explorase/R/ui.R
explorase/R/utils.R
explorase/build
explorase/build/vignette.rds
explorase/inst
explorase/inst/colors
explorase/inst/colors/rgb.txt
explorase/inst/doc
explorase/inst/doc/explorase.Rnw
explorase/inst/doc/explorase.pdf
explorase/inst/examples
explorase/inst/examples/test.R
explorase/inst/notes
explorase/inst/notes/plans.org
explorase/inst/scripts
explorase/inst/scripts/installer.R
explorase/inst/ui
explorase/inst/ui/browser.xml
explorase/inst/ui/ui.xml
explorase/inst/www
explorase/inst/www/docs.html
explorase/inst/www/download.html
explorase/inst/www/gallery.html
explorase/inst/www/index.html
explorase/man
explorase/man/exp-addEntityType-vx.Rd
explorase/man/exp-addFilterRule-rn.Rd
explorase/man/exp-calcAngleDist-31.Rd
explorase/man/exp-calcCanberraDist.Rd
explorase/man/exp-calcCorrelationDist-45.Rd
explorase/man/exp-calcDiff-y4.Rd
explorase/man/exp-calcEuclideanDist-dn.Rd
explorase/man/exp-calcMahalanobisDist-r1.Rd
explorase/man/exp-calcResiduals-ps.Rd
explorase/man/exp-calcZeroCorDist-by.Rd
explorase/man/exp-close.Rd
explorase/man/exp-colorEntities-1h.Rd
explorase/man/exp-dataset-6l.Rd
explorase/man/exp-designFactors-72.Rd
explorase/man/exp-designFrame-d0.Rd
explorase/man/exp-designSelection-5s.Rd
explorase/man/exp-entitiesInList-df.Rd
explorase/man/exp-entityFrame-4j.Rd
explorase/man/exp-entitySelection-11.Rd
explorase/man/exp-entityType-69.Rd
explorase/man/exp-entityTypes-9e.Rd
explorase/man/exp-filterRules-vt.Rd
explorase/man/exp-findPatterns-yw.Rd
explorase/man/exp-ggobi-69.Rd
explorase/man/exp-isRunning-fo.Rd
explorase/man/exp-listFrame-gp.Rd
explorase/man/exp-listSelection.Rd
explorase/man/exp-loadData-bo.Rd
explorase/man/exp-loadDesign-35.Rd
explorase/man/exp-loadFiles-1w.Rd
explorase/man/exp-loadInfo-gk.Rd
explorase/man/exp-loadLists-pr.Rd
explorase/man/exp-loadProject-1g.Rd
explorase/man/exp-newList-bs.Rd
explorase/man/exp-removeFilterRules-1i.Rd
explorase/man/exp-showClustering-b7.Rd
explorase/man/exp-showPatterns-bh.Rd
explorase/man/exp-showResults-sk.Rd
explorase/man/exp-toggleFilterRules-ts.Rd
explorase/man/exp_bioc.Rd
explorase/man/explorase.Rd
explorase/vignettes
explorase/vignettes/biotin-difference.jpg
explorase/vignettes/biotin-difference2.jpg
explorase/vignettes/exp-design.jpg
explorase/vignettes/explorase.Rnw
explorase/vignettes/explorase.bib
explorase/vignettes/filter-gui.jpg
explorase/vignettes/ggtree.jpg
explorase/vignettes/limma-biotin.jpg
explorase/vignettes/limma.jpg
explorase/vignettes/main-gui.jpg
explorase/vignettes/pattern-finder-selected.jpg
explorase/vignettes/pattern-finder.jpg
explorase/vignettes/subsetting.jpg
explorase/vignettes/temporal.jpg