explorase: GUI for exploratory data analysis of systems biology data

explore and analyze *omics data with R and GGobi

AuthorMichael Lawrence, Eun-kyung Lee, Dianne Cook, Jihong Kim, Hogeun An, and Dongshin Kim
Date of publicationNone
MaintainerMichael Lawrence <michafla@gene.com>
LicenseGPL-2
Version1.38.0
http://www.metnetdb.org/MetNet_exploRase.htm

View on Bioconductor

Man pages

exp-addEntityType-vx: Add an entity type

exp-addFilterRule-rn: Add a filter rule

exp_bioc: ExpressionSet Integration

exp-calcAngleDist-31: Caclulate angle distance

exp-calcCanberraDist: Calculate Canberra distance

exp-calcCorrelationDist-45: Calculate correlation distance

exp-calcDiff-y4: Calculate difference

exp-calcEuclideanDist-dn: Calculate Euclidean distance

exp-calcMahalanobisDist-r1: Calculate Mahalanobis distance

exp-calcResiduals-ps: Calculate residuals

exp-calcZeroCorDist-by: Calculate zero-correlation distance

exp-close: Close exploRase

exp-colorEntities-1h: Coloring entities

exp-dataset-6l: Get experimental data

exp-designFactors-72: Get the exp. design factors

exp-designFrame-d0: Get the exp. design

exp-designSelection-5s: Get selected conditions

exp-entitiesInList-df: Get the entities in a list

exp-entityFrame-4j: Get entity metadata

exp-entitySelection-11: Get selected entities

exp-entityType-69: Get the current entity type

exp-entityTypes-9e: Get all entity types

exp-filterRules-vt: Get filter rules

exp-findPatterns-yw: Find Patterns

exp-ggobi-69: Get the GGobi session

exp-isRunning-fo: Check whether exploRase is running

exp-listFrame-gp: Get entity lists

exp-listSelection: Get selected lists

exp-loadData-bo: Load experimental data

exp-loadDesign-35: Load experimental design

exp-loadFiles-1w: Load files

exp-loadInfo-gk: Load entity metadata

exp-loadLists-pr: Load entity lists

exp-loadProject-1g: Load a project

explorase: Start exploRase

exp-newList-bs: Create an entity list

exp-removeFilterRules-1i: Remove filter rules

exp-showClustering-b7: Show a hierarchical clustering

exp-showPatterns-bh: Show patterns

exp-showResults-sk: Show analysis results

exp-toggleFilterRules-ts: Toggle filter rules

Files in this package

explorase/.BBSoptions
explorase/DESCRIPTION
explorase/NAMESPACE
explorase/R
explorase/R/atgs.R explorase/R/bioc.R explorase/R/brush.R explorase/R/constants.R explorase/R/data.R explorase/R/datamodels.R explorase/R/design.R explorase/R/difference.R explorase/R/entities.R explorase/R/explorase.R explorase/R/fcmodeler.R explorase/R/filter.R explorase/R/ggobi.R explorase/R/ggtree.R explorase/R/globals.R explorase/R/io.R explorase/R/lists.R explorase/R/metnet.R explorase/R/modeling.R explorase/R/networks.R explorase/R/patterns.R explorase/R/tasks.R explorase/R/ui.R explorase/R/utils.R
explorase/build
explorase/build/vignette.rds
explorase/inst
explorase/inst/colors
explorase/inst/colors/rgb.txt
explorase/inst/doc
explorase/inst/doc/explorase.Rnw
explorase/inst/doc/explorase.pdf
explorase/inst/examples
explorase/inst/examples/test.R
explorase/inst/notes
explorase/inst/notes/plans.org
explorase/inst/scripts
explorase/inst/scripts/installer.R
explorase/inst/ui
explorase/inst/ui/browser.xml
explorase/inst/ui/ui.xml
explorase/inst/www
explorase/inst/www/docs.html
explorase/inst/www/download.html
explorase/inst/www/gallery.html
explorase/inst/www/index.html
explorase/man
explorase/man/exp-addEntityType-vx.Rd explorase/man/exp-addFilterRule-rn.Rd explorase/man/exp-calcAngleDist-31.Rd explorase/man/exp-calcCanberraDist.Rd explorase/man/exp-calcCorrelationDist-45.Rd explorase/man/exp-calcDiff-y4.Rd explorase/man/exp-calcEuclideanDist-dn.Rd explorase/man/exp-calcMahalanobisDist-r1.Rd explorase/man/exp-calcResiduals-ps.Rd explorase/man/exp-calcZeroCorDist-by.Rd explorase/man/exp-close.Rd explorase/man/exp-colorEntities-1h.Rd explorase/man/exp-dataset-6l.Rd explorase/man/exp-designFactors-72.Rd explorase/man/exp-designFrame-d0.Rd explorase/man/exp-designSelection-5s.Rd explorase/man/exp-entitiesInList-df.Rd explorase/man/exp-entityFrame-4j.Rd explorase/man/exp-entitySelection-11.Rd explorase/man/exp-entityType-69.Rd explorase/man/exp-entityTypes-9e.Rd explorase/man/exp-filterRules-vt.Rd explorase/man/exp-findPatterns-yw.Rd explorase/man/exp-ggobi-69.Rd explorase/man/exp-isRunning-fo.Rd explorase/man/exp-listFrame-gp.Rd explorase/man/exp-listSelection.Rd explorase/man/exp-loadData-bo.Rd explorase/man/exp-loadDesign-35.Rd explorase/man/exp-loadFiles-1w.Rd explorase/man/exp-loadInfo-gk.Rd explorase/man/exp-loadLists-pr.Rd explorase/man/exp-loadProject-1g.Rd explorase/man/exp-newList-bs.Rd explorase/man/exp-removeFilterRules-1i.Rd explorase/man/exp-showClustering-b7.Rd explorase/man/exp-showPatterns-bh.Rd explorase/man/exp-showResults-sk.Rd explorase/man/exp-toggleFilterRules-ts.Rd explorase/man/exp_bioc.Rd explorase/man/explorase.Rd
explorase/vignettes
explorase/vignettes/biotin-difference.jpg
explorase/vignettes/biotin-difference2.jpg
explorase/vignettes/exp-design.jpg
explorase/vignettes/explorase.Rnw
explorase/vignettes/explorase.bib
explorase/vignettes/filter-gui.jpg
explorase/vignettes/ggtree.jpg
explorase/vignettes/limma-biotin.jpg
explorase/vignettes/limma.jpg
explorase/vignettes/main-gui.jpg
explorase/vignettes/pattern-finder-selected.jpg
explorase/vignettes/pattern-finder.jpg
explorase/vignettes/subsetting.jpg
explorase/vignettes/temporal.jpg

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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