exp-findPatterns-yw: Find Patterns
In explorase: GUI for exploratory data analysis of systems biology data

Description Usage Arguments Value Author(s)

Finds patterns in data. Transitions within range of 'fraction' (centered on median) are considered flat (unchanging). Those below are falling and those above are rising.

1	exp_findPatterns(data, flat_fraction)

`data`	A data frame of experimental data according to exploRase conventions.
`flat_fraction`	The fraction of transitions considered unchanged, centered on median.

a data frame, with a row for each gene. The first column is the sum of x^i over all i from 1 to ncol(data)-1, where x is 1, 2, or 3, depending on whether the pattern is up, same, or down, respectively, for transition i. The second column contains the magnitude of the pattern.

Michael Lawrence <mflawren@fhcrc.org>

explorase documentation built on Nov. 8, 2020, 7:04 p.m.