| exp-addEntityType-vx | Add an entity type |
| exp-addFilterRule-rn | Add a filter rule |
| exp_bioc | ExpressionSet Integration |
| exp-calcAngleDist-31 | Caclulate angle distance |
| exp-calcCanberraDist | Calculate Canberra distance |
| exp-calcCorrelationDist-45 | Calculate correlation distance |
| exp-calcDiff-y4 | Calculate difference |
| exp-calcEuclideanDist-dn | Calculate Euclidean distance |
| exp-calcMahalanobisDist-r1 | Calculate Mahalanobis distance |
| exp-calcResiduals-ps | Calculate residuals |
| exp-calcZeroCorDist-by | Calculate zero-correlation distance |
| exp-close | Close exploRase |
| exp-colorEntities-1h | Coloring entities |
| exp-dataset-6l | Get experimental data |
| exp-designFactors-72 | Get the exp. design factors |
| exp-designFrame-d0 | Get the exp. design |
| exp-designSelection-5s | Get selected conditions |
| exp-entitiesInList-df | Get the entities in a list |
| exp-entityFrame-4j | Get entity metadata |
| exp-entitySelection-11 | Get selected entities |
| exp-entityType-69 | Get the current entity type |
| exp-entityTypes-9e | Get all entity types |
| exp-filterRules-vt | Get filter rules |
| exp-findPatterns-yw | Find Patterns |
| exp-ggobi-69 | Get the GGobi session |
| exp-isRunning-fo | Check whether exploRase is running |
| exp-listFrame-gp | Get entity lists |
| exp-listSelection | Get selected lists |
| exp-loadData-bo | Load experimental data |
| exp-loadDesign-35 | Load experimental design |
| exp-loadFiles-1w | Load files |
| exp-loadInfo-gk | Load entity metadata |
| exp-loadLists-pr | Load entity lists |
| exp-loadProject-1g | Load a project |
| explorase | Start exploRase |
| exp-newList-bs | Create an entity list |
| exp-removeFilterRules-1i | Remove filter rules |
| exp-showClustering-b7 | Show a hierarchical clustering |
| exp-showPatterns-bh | Show patterns |
| exp-showResults-sk | Show analysis results |
| exp-toggleFilterRules-ts | Toggle filter rules |
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