flipflop: Fast lasso-based isoform prediction as a flow problem

Flipflop discovers which isoforms of a gene are expressed in a given sample together with their abundances, based on RNA-Seq read data. It takes an alignment file in SAM format as input. It can also discover transcripts from several samples simultaneously, increasing statistical power.

Package details

AuthorElsa Bernard, Laurent Jacob, Julien Mairal and Jean-Philippe Vert
Bioconductor views AlternativeSplicing RNASeq RNASeqData Regression
MaintainerElsa Bernard <elsa.bernard@mines-paristech.fr>
URL http://cbio.ensmp.fr/flipflop
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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flipflop documentation built on May 2, 2019, 1:02 a.m.