Flipflop discovers which isoforms of a gene are expressed in a given sample together with their abundances, based on RNA-Seq read data. It takes an alignment file in SAM format as input. It can also discover transcripts from several samples simultaneously, increasing statistical power.
|Author||Elsa Bernard, Laurent Jacob, Julien Mairal and Jean-Philippe Vert|
|Bioconductor views||AlternativeSplicing RNASeq RNASeqData Regression|
|Maintainer||Elsa Bernard <[email protected]>|
|Package repository||View on Bioconductor|
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