Files in flipflop

Fast lasso-based isoform prediction as a flow problem

DESCRIPTION

NAMESPACE

inst/NEWS

inst/COPYING

inst/CITATION

inst/scripts/generateManPages.R

inst/doc/flipflop.Rnw

inst/doc/flipflop.R inst/doc/flipflop.pdf

inst/extdata/vignette-sam.txt

inst/extdata/flipflop.Rex

inst/extdata/vignette-annot.bed.txt

vignettes/flipflop.Rnw

vignettes/biblio.bib

R/max_lambda.R R/tictoc.R R/utils.R R/ff_spams.R R/ModelSelection.R R/grouplassoPoisson.R R/refitPoisson.R R/bins_paired.R R/regularization_path_grouplasso_dich.R R/duality_gap_poisson_graph.R R/collect_path_grouplasso.R R/flipflop.R R/PoissonLoss.R R/processsam.R R/refitSamples.R R/WrapperFlipFlop.R R/regularization_path.R R/spamsff.R R/graph_paired.R R/duality_gap_poisson.R R/graph_single.R R/WriteOutput.R

src/bedio.cpp

src/FileSplitter.h

src/samio.cpp

src/parseopt.h

src/R_init_flipflop.c

src/cvganalysis.h

src/ffProcesssam.cpp

src/auxiliaryio.cpp

src/readgroup.cpp

src/samples.h

src/auxiliaryio.h

src/structdef.h

src/samples.cpp

src/align.cpp

src/commontype.h

src/R_init_flipflop.h

src/instanceio.cpp

src/rangeset.h

src/instanceio.h

src/common.cpp

src/utils.h

src/FileSplitter.cpp

src/align.h

src/spams.cpp

src/Rinterface.h

src/parseopt.cpp

src/Makevars

src/rangeset.cpp

src/samio.h

src/common.h

src/spams.h

src/bedio.h

src/readgroup.h

src/structdef.cpp

src/cvganalysis.cpp

src/spams/dags/dag.h

src/spams/decomp/decomp.h

src/spams/linalg/cblas_defvar.h

src/spams/linalg/misc.h

src/spams/linalg/utils.h

src/spams/linalg/list.h

src/spams/linalg/cblas_alt_template.h

src/spams/linalg/linalg.h

src/spams/linalg/mexutils.h

src/spams/linalg/cblas_template.h

src/spams/prox/fista.h

src/spams/prox/project.h

man/flipflop.Rd

build/vignette.rds

flipflop documentation built on May 2, 2019, 1:02 a.m.