test.flowCL.connection: A function to check that a connection exists between the user...

In flowCL: Semantic labelling of flow cytometric cell populations

Description

A function to check that a connection exists between the user and the ontology server.

Usage

    test.flowCL.connection()

Value

The date of the lastest update of the cell ontology is returned.

Author(s)

Justin Meskas

Examples

    test.flowCL.connection()

Example output

Loading required package: Rgraphviz
Loading required package: graph
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colMeans, colSums, colnames,
    dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, lengths, mapply, match, mget,
    order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
    rowMeans, rowSums, rownames, sapply, setdiff, sort, table, tapply,
    union, unique, unsplit, which, which.max, which.min

Loading required package: grid
Loading required package: SPARQL
Loading required package: XML

Attaching package: 'XML'

The following object is masked from 'package:graph':

    addNode

Loading required package: RCurl
Loading required package: bitops


Executing test function test.flowCL.connection  ... Timing stopped at: 0.029 0 1.152
Error in function (type, msg, asError = TRUE)  : 
  Failed to connect to cell.ctde.net port 8080: Connection refused
 done successfully.

RUNIT TEST PROTOCOL -- Thu Jul  4 21:17:18 2019 
*********************************************** 
Number of test functions: 1 
Number of errors: 1 
Number of failures: 0 

 
1 Test Suite : 
flowCL.check - 1 test function, 1 error, 0 failures
ERROR in test.flowCL.connection: Error in function (type, msg, asError = TRUE)  : 
  Failed to connect to cell.ctde.net port 8080: Connection refused



Details 
*************************** 
Test Suite: flowCL.check 
Test function regexp: ^test.+ 
Test file regexp: ^test_.*\.R$ 
Involved directory: 
/usr/local/lib/R/site-library/flowCL/unitTests 
--------------------------- 
Test file: /usr/local/lib/R/site-library/flowCL/unitTests/test_connection.R 
test.flowCL.connection: ERROR !! 
Error in function (type, msg, asError = TRUE)  : 
  Failed to connect to cell.ctde.net port 8080: Connection refused

flowCL documentation built on Dec. 3, 2020, 2 a.m.