getRawBeta: Computes Beta value from raw signals

Description Usage Arguments Value Methods (by class) Examples

Description

Computes Beta value from raw signals

Usage

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getRawBeta(object, offset = 100)

## S4 method for signature 'SampleSet'
getRawBeta(object, offset = 100)

Arguments

object

object of class SampleSet

offset

default is 100 as Illumina standard

Value

a matrix containing the raw beta value for each position and each samples

Methods (by class)

Examples

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require(minfiData)
pData(RGsetEx)$cell_type <- rep(c("type1","type2"),3)
mySampleSet=fromRGChannelSet(RGsetEx)
r=getRawBeta(mySampleSet)

funtooNorm documentation built on Nov. 1, 2018, 2:23 a.m.