plotValidationGraph: plot of Validation Graph for determing number of components
In funtooNorm: Normalization Procedure for Infinium HumanMethylation450 BeadChip Kit
Description
Usage
Arguments
Value
Methods (by class)
Examples
Description
Plots a series of graphs for each signal type, to determine
the number of components to include in the normalization procedure.
Usage
1
2
3
4
5
plotValidationGraph(object, type.fits = "PCR", pdf.file = NULL)
## S4 method for signature 'SampleSet'
plotValidationGraph(object, type.fits = "PCR",
pdf.file = NULL)
Arguments
object
of class SampleSet
type.fits
can be "PCR" or "PLS" (default "PCR")
pdf.file
if no file name is provided print pdf file
plotValidationGraph.pdf in working directory.
Value
No value is returned. The function prints the plots to a pdf file.
Methods (by class)
-
SampleSet: Plots a series of graphs for each
signal type, to determine the number of components to include
in the normalization procedure.
Examples
1
2
3
4
require(minfiData)
pData(RGsetEx)$cell_type <- rep(c("type1","type2"),3)
mySampleSet=fromRGChannelSet(RGsetEx)
plotValidationGraph(mySampleSet)
funtooNorm documentation built on Nov. 8, 2020, 8:04 p.m.
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Description Usage Arguments Value Methods (by class) Examples
Description
Plots a series of graphs for each signal type, to determine the number of components to include in the normalization procedure.
Usage
1 2 3 4 5 | plotValidationGraph(object, type.fits = "PCR", pdf.file = NULL)
## S4 method for signature 'SampleSet'
plotValidationGraph(object, type.fits = "PCR",
pdf.file = NULL)
|
Arguments
object |
of class SampleSet |
type.fits |
can be "PCR" or "PLS" (default "PCR") |
pdf.file |
if no file name is provided print pdf file plotValidationGraph.pdf in working directory. |
Value
No value is returned. The function prints the plots to a pdf file.
Methods (by class)
-
SampleSet: Plots a series of graphs for each signal type, to determine the number of components to include in the normalization procedure.
Examples
1 2 3 4 | require(minfiData)
pData(RGsetEx)$cell_type <- rep(c("type1","type2"),3)
mySampleSet=fromRGChannelSet(RGsetEx)
plotValidationGraph(mySampleSet)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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