plotValidationGraph: plot of Validation Graph for determing number of components

Description Usage Arguments Value Methods (by class) Examples

Description

Plots a series of graphs for each signal type, to determine the number of components to include in the normalization procedure.

Usage

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plotValidationGraph(object, type.fits = "PCR", pdf.file = NULL)

## S4 method for signature 'SampleSet'
plotValidationGraph(object, type.fits = "PCR",
  pdf.file = NULL)

Arguments

object

of class SampleSet

type.fits

can be "PCR" or "PLS" (default "PCR")

pdf.file

if no file name is provided print pdf file plotValidationGraph.pdf in working directory.

Value

No value is returned. The function prints the plots to a pdf file.

Methods (by class)

Examples

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require(minfiData)
pData(RGsetEx)$cell_type <- rep(c("type1","type2"),3)
mySampleSet=fromRGChannelSet(RGsetEx)
plotValidationGraph(mySampleSet)

funtooNorm documentation built on Nov. 1, 2018, 2:23 a.m.