Files in gCMAP

Tools for Connectivity Map-like analyses

R/connectivity_score-methods.R R/CMAPCollection-accessors.R R/camera_score-methods.R R/AllGenerics.R R/featureScore-methods.R R/minSetSize-methods.R R/mroast_score-methods.R R/mapIdentifiers-methods.R R/wilcox_score-methods.R R/geneIndex-methods.R R/gsealm_jg_score-methods.R R/fisher_score-methods.R R/SignedGeneSet-accessors.R R/mgsa_score-methods.R R/zzz.R R/CMAPResults-accessors.R R/romer_score-methods.R R/AllClasses.R R/utility-functions.R R/gsealm_score-methods.R R/incidence-methods.R man/pairwise_compare.Rd man/GeneSet-methods.Rd man/SignedGeneSet-class.Rd man/mapNmerge.Rd man/CMAPCollection-class.Rd man/SignedGeneSet-methods.Rd man/generate_gCMAP_NChannelSet.Rd man/eset_instances.Rd man/mroast_score-methods.Rd man/memorize.Rd man/wilcox_score-methods.Rd man/annotate_eset_list.Rd man/induceCMAPCollection-methods.Rd man/camera_score-methods.Rd man/gsealm_score-methods.Rd man/signedRankSumTest.Rd man/mergeCMAPs.Rd man/pairwise_DESeq.Rd man/geneIndex-methods.Rd man/eSetOnDisk.Rd man/fisher_score-methods.Rd man/zScores.Rd man/gsealm_jg_score-methods.Rd man/connectivity_score-methods.Rd man/KEGG2cmap.Rd man/CMAPResults-class.Rd man/mgsa_score-methods.Rd man/featureScores-methods.Rd man/matrix_or_big.matrix-class.Rd man/gCMAP-package.Rd man/gCMAPData-dataset.Rd man/center_eSet.Rd man/DESeq_nbinom.Rd man/minSetSize-methods.Rd man/romer_score-methods.Rd man/splitPerturbations.Rd tests/runTests.R inst/doc/gCMAP.R inst/doc/diffExprAnalysis.R inst/doc/gCMAP.pdf inst/doc/diffExprAnalysis.pdf inst/unitTests/test_all.R