Example NChannelSet

Description

The gCMAPData object is an NChannelSet object with 3 samples x 1000 features x 3 channels (p-value, z-score and log_fc).

Usage

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Examples

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data(gCMAPData)

gene.set.collection <- induceCMAPCollection(gCMAPData, "z", higher=2, lower=-2)

## comparison with a single user-provided profile of z-scores
profile <- assayDataElement(gCMAPData, "z")[,1]
gsealm_jg_score(profile, gene.set.collection)

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