query_bundles: Query whether a project bundle is available from DEE2

In getDEE2: Programmatic access to the DEE2 RNA expression dataset

Description

This function sends a query to check whether a dataset is available or not.

Usage

query_bundles(species, query, col, bundles = NULL)

Arguments

species	A character string matching a species of interest.
query	A character string, such as the SRA project accession number or the GEO series accession number
col	the column name to be queried, usually "SRP_accession" for SRA project accession or "GSE_accession" for GEO series accession.
bundles	optional table of previously downloaded bundles.

Value

a list of datasets that are present and absent.

Examples

query_bundles("celegans", c("SRP133403","SRP133439"), col = "SRP_accession")

getDEE2 documentation built on Nov. 8, 2020, 7:46 p.m.