se: Create summarizedExperiment object
In getDEE2: Programmatic access to the DEE2 RNA expression dataset
Description
Usage
Arguments
Value
Examples
Description
This function creates a SummarizedExperiment object from a legacy getDEE2
dataset
Usage
1
se(x, counts = "GeneCounts")
Arguments
x
a getDEE2 object.
counts
select "GeneCounts" for STAR based gene counts, "TxCounts" for
kallisto transcript level counts or "Tx2Gene" for transcript counts
aggregated to gene level. Default is "GeneCounts"
Value
a SummarizedExperiment object
Examples
1
2
getDEE2 documentation built on Nov. 8, 2020, 7:46 p.m.
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Description Usage Arguments Value Examples
Description
This function creates a SummarizedExperiment object from a legacy getDEE2 dataset
Usage
1 | se(x, counts = "GeneCounts")
|
Arguments
x |
a getDEE2 object. |
counts |
select "GeneCounts" for STAR based gene counts, "TxCounts" for kallisto transcript level counts or "Tx2Gene" for transcript counts aggregated to gene level. Default is "GeneCounts" |
Value
a SummarizedExperiment object
Examples
1 2 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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