gscreend: Analysis of pooled genetic screens

Package for the analysis of pooled genetic screens (e.g. CRISPR-KO). The analysis of such screens is based on the comparison of gRNA abundances before and after a cell proliferation phase. The gscreend packages takes gRNA counts as input and allows detection of genes whose knockout decreases or increases cell proliferation.

Package details

AuthorKatharina Imkeller [cre, aut], Wolfgang Huber [aut]
Bioconductor views CRISPR PooledScreens Software StatisticalMethod
MaintainerKatharina Imkeller <[email protected]>
LicenseGPL-3
Version1.0.0
URL https://github.com/imkeller/gscreend
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("gscreend")

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gscreend documentation built on Oct. 31, 2019, 2:20 a.m.