API for h5vc
Managing alignment tallies using a hdf5 backend
| Global functions | |
|---|---|
| .blockify | Source code |
| .getDimensions | Source code |
| .h5dapplyIRanges | Source code |
| .mergeByGene | Source code |
| .processDataForMismatchPlot | Source code |
| .resubmitProblematicJobs | Source code |
| .setUpJobs | Source code |
| .waitAndCollect | Source code |
| .writeToTallyFile | Source code |
| applyTallies | Man page Source code |
| bases | Man page |
| batchTallies | Man page Source code |
| batchTallyParam | Man page Source code |
| binGenome | Man page Source code |
| binnedAFs | Man page Source code |
| binnedCoverage | Man page Source code |
| callDeletionsPaired | Man page |
| callVariantsPaired | Man page Source code |
| callVariantsPairedFisher | Man page Source code |
| callVariantsSingle | Man page Source code |
| collectTallies | Man page Source code |
| defineBlocks | Man page Source code |
| encodeDNAString | Man page Source code |
| formatGenomicPosition | Man page Source code |
| geom_h5vc | Man page Source code |
| getChromSize | Man page Source code |
| getSampleData | Man page Source code |
| h5dapply | Man page |
| h5dapply,GRanges-method | Man page |
| h5dapply,IRanges-method | Man page |
| h5dapply,numeric-method | Man page |
| h5readBlock | Man page Source code |
| h5vc | Man page |
| h5vc-package | Man page |
| mergeTallies | Man page Source code |
| mergeTallyFiles | Man page Source code |
| mismatchPlot | Man page Source code |
| mutationSpectrum | Man page Source code |
| plotMutationSpectrum | Man page Source code |
| prepareForHDF5 | Man page Source code |
| prepareTallyFile | Man page Source code |
| rerunBatchTallies | Man page Source code |
| resizeCohort | Man page Source code |
| setSampleData | Man page Source code |
| tallyBAM | Man page Source code |
| tallyRanges | Man page Source code |
| tallyRangesBatch | Man page Source code |
| tallyRangesToFile | Man page Source code |
| variantCalls | Man page |
| vcConfParams | Man page Source code |
| writeReference | Man page Source code |
| writeToTallyFile | Man page Source code |
