Files in h5vc
Managing alignment tallies using a hdf5 backend

NAMESPACE
DESCRIPTION
build/vignette.rds
src/bam.c
src/Makevars.win
src/bam_plbuf.c
src/Makevars
src/sam.c
src/tallyBAM.cpp
data/bases.rda
R/coverage.R R/call.variants.fisher.R R/set.sample.metadata.R R/write.reference.R R/tallyBAM.R R/h5apply.R R/tally.in.ranges.r R/applyTallies.R R/mergeTallyFiles.r R/mutation.spectrum.R R/h5readBlock.R R/call.variants.R R/plotting.R R/helpers.R R/prepareForHDF5.R R/get.sample.metadata.R R/call.variants.single.R R/prepareTallyFile.R R/getChromSize.R
vignettes/example.plot.5.png
vignettes/h5vc.tour.Rmd
vignettes/example.plot.2.png
vignettes/mutation.spectrum.example.png
vignettes/h5vc.simple.genome.browser.Rmd
vignettes/example.plot.4.png
vignettes/tally.file.layout.png
vignettes/bioc_adapted.css
vignettes/example.plot.3.png
vignettes/example.plot.1.png
man/tallyRanges.Rd man/coverage.Rd man/prepareForHDF5.Rd man/callVariantsSingle.Rd man/binnedAFs.Rd man/writeReference.Rd man/callVariantsFisher.Rd man/binGenome.Rd man/mismatchPlot.Rd man/tallyBAM.Rd man/h5dapply.Rd man/h5vc-package.Rd man/plotMutationSpectrum.Rd man/batchTallies.Rd man/geom_h5vc.Rd man/mutationSpectrum.Rd man/getSampleData.Rd man/prepareTallyFile.Rd man/h5readBlock.Rd man/mergeTallyFiles.Rd man/writeToTallyFile.Rd man/callVariants.Rd man/mergeTallies.Rd man/applyTallies.Rd man/helpers.Rd tests/runTests.R
inst/CITATION
inst/doc/h5vc.tour.html
inst/doc/h5vc.simple.genome.browser.html
inst/doc/h5vc.tour.Rmd inst/doc/h5vc.tour.R inst/doc/h5vc.simple.genome.browser.Rmd
inst/doc/bioc_adapted.css
inst/doc/h5vc.simple.genome.browser.R inst/unitTests/test_tallyBAM.R
inst/unitTests/expected.counts.txt
inst/unitTests/insert.bam.bai
inst/unitTests/insert.bam
h5vc documentation built on Nov. 8, 2020, 4:56 p.m.