ibh: Calculate interaction based homogeneity for the given gene...

Description Usage Arguments Value Author(s) See Also Examples

View source: R/ibh.R

Description

This function calculates interaction based homogeneity of the given gene list according to the interaction list

Usage

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ibh(interactionList, geneList)

Arguments

interactionList

List containing the interactions. For each gene/protein, the is an entry in the list with "name" containing name of the gen/protein and "interactors" containing the list of genes/proteins interacting with it.

geneList

List of genes/proteins for which interaction based homogeneity is evaluated.

Value

Interaction based homogeneity value as float

Author(s)

Kircicegi Korkmaz

See Also

ibhForMultipleGeneLists

Examples

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	require(simpIntLists)
	data(ArabidopsisBioGRIDInteractionEntrezId)
	geneList <-  list(839226,817241, 824340, 832179, 818561, 831145, 838782, 826404);
	ibh(ArabidopsisBioGRIDInteractionEntrezId,geneList);

ibh documentation built on May 31, 2017, 11:40 a.m.

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