Files in igvR
igvR: integrative genomics viewer
README.md
igvR documentation built on Nov. 8, 2020, 7:14 p.m.
build.makefile
NEWS
NAMESPACE
DESCRIPTION
LICENSE
build/vignette.rds
R/QuantitativeTrack.R
R/igvAnnotationTrack.R
R/UCSCBedAnnotationTrack.R
R/Track.R
R/GRangesAnnotationTrack.R
R/DataFrameQuantitativeTrack.R
R/DataFrameAnnotationTrack.R
R/GenomicAlignmentTrack.R
R/VariantTrack.R
R/UCSCBedGraphQuantitativeTrack.R
R/GRangesQuantitativeTrack.R
R/igvR.R
R/BedpeInteractionsTrack.R
vignettes/basicIntro.Rmd
vignettes/igvR-ctcf-vignette.png
vignettes/alzheimersVariantsNearMEF2C.Rmd
vignettes/igvR-basicDemo.png
vignettes/igvR-mef2c-Alzheimers-demo-zoomedOut.png
vignettes/ctcf-chip-seq-gata2-252kb-igvR.png
vignettes/ctcfChipSeq.Rmd
vignettes/igvR-mef2c-Alzheimers-demo-zoomedIn.png
vignettes/igvR-ctcf-vignette-zoomedOut.png
vignettes/igvR-ctcf-vignette-zoomedIn.png
vignettes/igvR-mef2c-Alzheimers-demo.png
vignettes/makefile
man/trackSize-UCSCBedAnnotationTrack-method.Rd
man/Track-class.Rd
man/GRangesAnnotationTrack-class.Rd
man/displayTrack.Rd
man/trackSize.Rd
man/trackInfo.Rd
man/BedpeInteractionsTrack-class.Rd
man/ping.Rd
man/trackSize-VariantTrack-method.Rd
man/trackSize-GRangesQuantitativeTrack-method.Rd
man/igvR-class.Rd
man/trackSize-DataFrameAnnotationTrack-method.Rd
man/setGenome.Rd
man/QuantitativeTrack-class.Rd
man/trackSize-UCSCBedGraphQuantitativeTrack-method.Rd
man/GRangesQuantitativeTrack-class.Rd
man/removeTracksByName.Rd
man/VariantTrack-class.Rd
man/UCSCBedGraphQuantitativeTrack-class.Rd
man/igvAnnotationTrack-class.Rd
man/trackSize-GRangesAnnotationTrack-method.Rd
man/UCSCBedAnnotationTrack-class.Rd
man/getSupportedGenomes.Rd
man/setTrackClickFunction.Rd
man/showGenomicRegion.Rd
man/DataFrameAnnotationTrack-class.Rd
man/trackSize-GenomicAlignmentTrack-method.Rd
man/trackSize-DataFrameQuantitativeTrack-method.Rd
man/getGenomicRegion.Rd
man/GenomicAlignmentTrack-class.Rd
man/trackSize-BedpeInteractionsTrack-method.Rd
man/saveToSVG.Rd
man/enableMotifLogoPopups.Rd
man/DataFrameQuantitativeTrack-class.Rd
man/getTrackNames.Rd
inst/doc/basicIntro.Rmd
inst/doc/alzheimersVariantsNearMEF2C.Rmd
inst/doc/basicIntro.R
inst/doc/alzheimersVariantsNearMEF2C.html
inst/doc/basicIntro.html
inst/doc/ctcfChipSeq.Rmd
inst/doc/ctcfChipSeq.R
inst/doc/ctcfChipSeq.html
inst/doc/alzheimersVariantsNearMEF2C.R
inst/browserCode/makefile
inst/browserCode/src/igvApp.pre
inst/browserCode/src/igvApp.css
inst/browserCode/src/igvApp.js
inst/browserCode/dist/igvApp.html
inst/extdata/tbl.mef2cGWAS.variants.RData
inst/extdata/psg1.bam.bai
inst/extdata/psg1.bam
inst/extdata/GSM749704_hg19_chr19_128M.bam.bai
inst/extdata/tumor.bam.bai
inst/extdata/GSM749704_hg19_chr19_128M.bam
inst/extdata/sixColumn-demo1.bedpe
inst/extdata/GSM749704_hg19_chr19_peaks.narrowPeak
inst/extdata/mef2c-4kb.vcf
inst/extdata/tumor.bam
inst/extdata/tenColumn-demo2.bedpe
inst/extdata/tbl.with.MotifDbNames.Rdata
inst/extdata/mm10-sample.bw
inst/unitTests/childrensDemo.R
inst/unitTests/test_Tracks.R
inst/unitTests/test_igvR.R
