Description Usage Arguments Details Value Examples
GRangesAnnotationTrack
creates and IGV
track for bed-like objects expressed as GRanges
1 2 3 4 5 6 7 8 9 10 11 12 | GRangesAnnotationTrack(
trackName,
annotationData,
color = "darkGrey",
displayMode = "SQUISHED",
trackHeight = 50,
expandedRowHeight = 30,
squishedRowHeight = 15,
maxRows = 500,
searchable = FALSE,
visibilityWindow = 1e+05
)
|
trackName |
A character string, used as track label by igv, we recommend unique names per track. |
annotationData |
A GRanges object with optional name metadata column |
color |
A CSS color name (e.g., "red" or "#FF0000") |
displayMode |
"COLLAPSED", "SQUISHED" or "EXPANDED". Spelling and case must be precise. |
trackHeight |
track height, typically in range 20 (for annotations) and up to 1000 (for large sample vcf files) |
expandedRowHeight |
Height of each row of features in "EXPANDED" mode. |
squishedRowHeight |
Height of each row of features in "SQUISHED" mode, for compact viewing. |
maxRows |
of features to display |
searchable |
If TRUE, labels on annotation elements may be used in search |
visibilityWindow |
Maximum window size in base pairs for which indexed annotations or variants are displayed. Defaults: 1 MB for variants, whole chromosome for other track types. |
Detailed description goes here
A GRangesAnnotationTrack object
1 2 3 4 5 6 7 8 9 10 |
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