Files in igvR

igvR: integrative genomics viewer

README.md

build.makefile

NEWS

NAMESPACE

DESCRIPTION

LICENSE

build/vignette.rds

R/QuantitativeTrack.R R/igvAnnotationTrack.R R/UCSCBedAnnotationTrack.R R/Track.R R/GRangesAnnotationTrack.R R/DataFrameQuantitativeTrack.R R/DataFrameAnnotationTrack.R R/GenomicAlignmentTrack.R R/VariantTrack.R R/UCSCBedGraphQuantitativeTrack.R R/GRangesQuantitativeTrack.R R/igvR.R R/BedpeInteractionsTrack.R vignettes/basicIntro.Rmd

vignettes/igvR-ctcf-vignette.png

vignettes/alzheimersVariantsNearMEF2C.Rmd

vignettes/igvR-basicDemo.png

vignettes/igvR-mef2c-Alzheimers-demo-zoomedOut.png

vignettes/ctcf-chip-seq-gata2-252kb-igvR.png

vignettes/ctcfChipSeq.Rmd

vignettes/igvR-mef2c-Alzheimers-demo-zoomedIn.png

vignettes/igvR-ctcf-vignette-zoomedOut.png

vignettes/igvR-ctcf-vignette-zoomedIn.png

vignettes/igvR-mef2c-Alzheimers-demo.png

vignettes/makefile

man/trackSize-UCSCBedAnnotationTrack-method.Rd man/Track-class.Rd man/GRangesAnnotationTrack-class.Rd man/displayTrack.Rd man/trackSize.Rd man/trackInfo.Rd man/BedpeInteractionsTrack-class.Rd man/ping.Rd man/trackSize-VariantTrack-method.Rd man/trackSize-GRangesQuantitativeTrack-method.Rd man/igvR-class.Rd man/trackSize-DataFrameAnnotationTrack-method.Rd man/setGenome.Rd man/QuantitativeTrack-class.Rd man/trackSize-UCSCBedGraphQuantitativeTrack-method.Rd man/GRangesQuantitativeTrack-class.Rd man/removeTracksByName.Rd man/VariantTrack-class.Rd man/UCSCBedGraphQuantitativeTrack-class.Rd man/igvAnnotationTrack-class.Rd man/trackSize-GRangesAnnotationTrack-method.Rd man/UCSCBedAnnotationTrack-class.Rd man/getSupportedGenomes.Rd man/setTrackClickFunction.Rd man/showGenomicRegion.Rd man/DataFrameAnnotationTrack-class.Rd man/trackSize-GenomicAlignmentTrack-method.Rd man/trackSize-DataFrameQuantitativeTrack-method.Rd man/getGenomicRegion.Rd man/GenomicAlignmentTrack-class.Rd man/trackSize-BedpeInteractionsTrack-method.Rd man/saveToSVG.Rd man/enableMotifLogoPopups.Rd man/DataFrameQuantitativeTrack-class.Rd man/getTrackNames.Rd inst/doc/basicIntro.Rmd inst/doc/alzheimersVariantsNearMEF2C.Rmd inst/doc/basicIntro.R

inst/doc/alzheimersVariantsNearMEF2C.html

inst/doc/basicIntro.html

inst/doc/ctcfChipSeq.Rmd inst/doc/ctcfChipSeq.R

inst/doc/ctcfChipSeq.html

inst/doc/alzheimersVariantsNearMEF2C.R

inst/browserCode/makefile

inst/browserCode/src/igvApp.pre

inst/browserCode/src/igvApp.css

inst/browserCode/src/igvApp.js

inst/browserCode/dist/igvApp.html

inst/extdata/tbl.mef2cGWAS.variants.RData

inst/extdata/psg1.bam.bai

inst/extdata/psg1.bam

inst/extdata/GSM749704_hg19_chr19_128M.bam.bai

inst/extdata/tumor.bam.bai

inst/extdata/GSM749704_hg19_chr19_128M.bam

inst/extdata/sixColumn-demo1.bedpe

inst/extdata/GSM749704_hg19_chr19_peaks.narrowPeak

inst/extdata/mef2c-4kb.vcf

inst/extdata/tumor.bam

inst/extdata/tenColumn-demo2.bedpe

inst/extdata/tbl.with.MotifDbNames.Rdata

inst/extdata/mm10-sample.bw

inst/unitTests/childrensDemo.R inst/unitTests/test_Tracks.R inst/unitTests/test_igvR.R

igvR documentation built on Nov. 8, 2020, 7:14 p.m.