Description Usage Arguments Details Value
QuantitativeTrack
creates an IGV
track for genomic tracks in which a numerical value is
associated with each reported location.
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trackName |
A character string, used as track label by igv, we recommend unique names per track. |
quantitativeData |
A polyvalent object, either a data.frame, GRanges, or UCSCBedGraphQuantitative object |
fileFormat |
only "bedGraph" supported at present; wig and bigWig support soon. |
color |
A CSS color name (e.g., "red" or "#FF0000") |
sourceType |
only "file" supported at present ("gcs" for Google Cloud Storage, and "ga4gh" for the Global Alliance API may come) |
autoscale |
Autoscale track to maximum value in view |
min |
Sets the minimum value for the data (y-axis) scale. Usually zero. |
max |
Sets the maximum value for the data (y-axis) scale. This value is ignored if autoscale is TRUE |
visibilityWindow |
Maximum window size in base pairs for which indexed annotations or variants are displayed. Defaults: 1 MB for variants, whole chromosome for other track types. |
Detailed description will go here
A QuantitativeTrack object
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