read.bed: File input: .bed
In lfa: Logistic Factor Analysis for Categorical Data
Description
Usage
Arguments
Details
Value
Examples
Description
Reads in genotypes in .bed format with corresponding bim
and fam files
Usage
1
read.bed(bed.prefix)
Arguments
bed.prefix
Path leading to the bed, bim, and fam files.
Details
Use plink with –make-bed
Value
Genotype matrix
Examples
1
2
3
4
# assuming you have PLINK format HapMap data from: http://pngu.mgh.harvard.edu/~purcell/plink/res.shtml
# run this in the unpacked folder
x = NULL
## Not run: x = read.bed("hapmap_r23a")
lfa documentation built on Nov. 8, 2020, 7:30 p.m.
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Description Usage Arguments Details Value Examples
Description
Reads in genotypes in .bed format with corresponding bim and fam files
Usage
1 | read.bed(bed.prefix)
|
Arguments
bed.prefix |
Path leading to the bed, bim, and fam files. |
Details
Use plink with –make-bed
Value
Genotype matrix
Examples
1 2 3 4 | # assuming you have PLINK format HapMap data from: http://pngu.mgh.harvard.edu/~purcell/plink/res.shtml
# run this in the unpacked folder
x = NULL
## Not run: x = read.bed("hapmap_r23a")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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