Significant Gene Expression Profile Differences in Time Course Gene Expression Data

average.rows | Average rows by match and index |

data.abiotic | Gene expression data potato abiotic stress |

edesign.abiotic | Experimental design potato abiotic stress |

edesignCT | Experimental design with a shared time |

edesignDR | Experimental design with different replicates |

getDS | Extract lists of significant isoforms from Differentially... |

getDSPatterns | Lists of genes with Isoforms in different clusters |

get.siggenes | Extract significant genes for sets of variables in time... |

i.rank | Ranks a vector to index |

ISOdata | RNA-Seq dataset example for isoforms |

ISOdesign | Experimental design for ISOdata dataset example |

IsoModel | Detection of genes with Isoforms with different gene... |

IsoPlot | Plotting the isoform profiles of a specific gene by groups |

make.design.matrix | Make a design matrix for regression fit of time series gene... |

maSigPro | Wrapping function for identifying significant differential... |

maSigProUsersGuide | View maSigPro User's Guide |

NBdata | RNA-Seq dataset example |

NBdesign | Experimental design for RNA-Seq example |

PlotGroups | Function for plotting gene expression profile at different... |

PlotProfiles | Function for visualization of gene expression profiles |

PodiumChange | Detection of Genes with switchs of their major isoforms |

position | Column position of a variable in a data frame |

p.vector | Make regression fit for time series gene expression... |

reg.coeffs | Calculate true variables regression coefficients |

seeDS | Wrapper function for visualization of significant isoforms... |

see.genes | Wrapper function for visualization of gene expression values... |

stepback | Fitting a linear model by backward-stepwise regression |

stepfor | Fitting a linear model by forward-stepwise regression |

suma2Venn | Creates a Venn Diagram from a matrix of characters |

tableDS | Identification of Mayor and minor Isoforms in the clusters |

T.fit | Makes a stepwise regression fit for time series gene... |

two.ways.stepback | Fitting a linear model by backward-stepwise regression |

two.ways.stepfor | Fitting a linear model by forward-stepwise regression |

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