dot-initialize_theta: .initialize_theta
In methylCC: Estimate the cell composition of whole blood in DNA methylation samples
Description
Usage
Arguments
Value
Description
Creates a container with initial theta
parameter estimates
Usage
1
2
Arguments
n
Number of samples
K
Number of cell types
alpha0
Default NULL. Initial mean methylation
level in unmethylated regions
alpha1
Default NULL. Initial mean methylation
level in methylated regions
sig0
Default NULL. Initial var methylation
level in unmethylated regions
sig1
Default NULL. Initial var methylation
level in methylated regions
tau
Default NULL. Initial var for measurement error
Value
A data frame with initial parameter estimates
to be used in .initializeMLEs().
methylCC documentation built on Nov. 8, 2020, 7:35 p.m.
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Description Usage Arguments Value
Description
Creates a container with initial theta parameter estimates
Usage
1 2 |
Arguments
n |
Number of samples |
K |
Number of cell types |
alpha0 |
Default NULL. Initial mean methylation level in unmethylated regions |
alpha1 |
Default NULL. Initial mean methylation level in methylated regions |
sig0 |
Default NULL. Initial var methylation level in unmethylated regions |
sig1 |
Default NULL. Initial var methylation level in methylated regions |
tau |
Default NULL. Initial var for measurement error |
Value
A data frame with initial parameter estimates
to be used in .initializeMLEs().
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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