dot-methylcc_engine: .methylcc_engine

Description Usage Arguments Value

Description

Helper function for estimatecc

Usage

1
.methylcc_engine(Ys, Zs, current_pi_mle, current_theta, epsilon, max_iter)

Arguments

Ys

observed methylation levels in samples provided by user of dimension R x n

Zs

Cell type specific regions of dimension R x K

current_pi_mle

cell composition MLE estimates of dimension K x n

current_theta

other parameter estimates in EM algorithm

epsilon

Add here.

max_iter

Add here.

Value

A list of MLE estimates that is used in estimatecc().


methylCC documentation built on Nov. 8, 2020, 7:35 p.m.