API for methylPipe
Base resolution DNA methylation data analysis
| Global functions | |
|---|---|
| $,BSdataSet | Man page |
| $,BSdataSet-method | Man page |
| $,GElist | Man page |
| $,GElist-method | Man page |
| .onLoad | Source code |
| BSdata | Man page Source code |
| BSdata-class | Man page |
| BSdataSet | Man page Source code |
| BSdataSet-class | Man page |
| BSprepare | Man page Source code |
| GEcollection | Man page |
| GEcollection-class | Man page |
| GElist | Man page Source code |
| GElist-class | Man page |
| [,BSdataSet,ANY,ANY-method | Man page |
| [,GElist,ANY,ANY-method | Man page |
| [[,BSdataSet,ANY,ANY-method | Man page |
| [[,GElist,ANY,ANY-method | Man page |
| [[<-,BSdataSet,ANY,ANY-method | Man page |
| [[<-,GElist,ANY,ANY-method | Man page |
| binC | Man page |
| binC,GEcollection-method | Man page |
| binmC | Man page |
| binmC,GEcollection-method | Man page |
| binrC | Man page |
| binrC,GEcollection-method | Man page |
| binscore | Man page |
| binscore,GEcollection-method | Man page |
| binscore<- | Man page |
| binscore<-,GEcollection-method | Man page |
| chiCombP | Man page Source code |
| chr | Man page |
| chr,GEcollection-method | Man page |
| consolidateDMRs | Man page Source code |
| extractBinGRanges | Man page Source code |
| findDMR | Man page |
| findDMR,BSdataSet-method | Man page |
| findDMR,methylPipe,BSdataSet | Man page |
| findDMR,methylPipe,BSdataSet-method | Man page |
| findDMR-methods | Man page |
| findPMDs | Man page |
| findPMDs,BSdata-method | Man page |
| findPMDs,methylPipe,BSdata | Man page |
| findPMDs,methylPipe,BSdata-method | Man page |
| findPMDs-methods | Man page |
| getCpos | Man page Source code |
| getCposChr | Man page Source code |
| getCposDensity | Man page Source code |
| length | Man page |
| length,BSdataSet-method | Man page |
| length,GEcollection-method | Man page |
| length,GElist-method | Man page |
| mCsmoothing | Man page |
| mCsmoothing,BSdata-method | Man page |
| mCsmoothing,methylPipe,BSdata | Man page |
| mCsmoothing,methylPipe,BSdata-method | Man page |
| mCsmoothing-methods | Man page |
| mapBSdata2GRanges | Man page Source code |
| mapBSdata2GRangesBin | Man page Source code |
| meth.call | Man page Source code |
| methstats | Man page |
| methstats,BSdataSet-method | Man page |
| methstats,methylPipe,BSdataSet | Man page |
| methstats,methylPipe,BSdataSet-method | Man page |
| methstats-methods | Man page |
| methylPipe | Man page |
| methylPipe-package | Man page |
| nbins | Man page |
| nbins,GEcollection-method | Man page |
| plotMeth | Man page Source code |
| pool.reads | Man page Source code |
| process.hmc | Man page Source code |
| profileDNAmetBin | Man page Source code |
| profileDNAmetBinParallel | Man page Source code |
| show,BSdata-method | Man page |
| show,BSdataSet-method | Man page |
| show,GEcollection-method | Man page |
| show,GElist-method | Man page |
| splitChrs | Man page Source code |
| tabixdata2GR | Man page Source code |
