Files in methylPipe
Base resolution DNA methylation data analysis

DESCRIPTION
NAMESPACE
NEWS
inst/CITATION
inst/doc/methylPipe.R
inst/doc/methylPipe.rnw
inst/doc/methylPipe.pdf
inst/extdata/IMR90_chr20_CG_10k_tabix_out.txt.gz.tbi
inst/extdata/IMR90_chr20_CG_10k_tabix_out.txt.gz
inst/extdata/H1_chr20_CG_10k.txt
inst/extdata/DMRs.Rdata
inst/extdata/GR_chr20.Rdata
inst/extdata/H1_chr20_CG_10k_tabix_out.txt.gz.tbi
inst/extdata/gec.IMR90.Rdata
inst/extdata/gec.H1.Rdata
inst/extdata/H1_chr20_CG_10k_tabix_out.txt.gz
inst/extdata/uncov_GR.Rdata
inst/extdata/test_methcall/methylPipe_ex.sam
R/GEcollection-methods.R R/BSdataSet-methods.R R/AllClasses.R R/Allfunctions.R R/GElist-methods.R R/BSdata-methods.R R/zzz.R
build/vignette.rds
src/R_init_methylPipe.c
src/binning.h
src/binning.c
vignettes/methylPipe.rnw
man/extractBinGRanges.Rd man/meth.call.Rd man/BSprepare.Rd man/mapBSdata2GRanges.Rd man/BSdataSet-class.Rd man/process.hmc.Rd man/pool.reads.Rd man/findPMDs.Rd man/mCsmoothing.Rd man/profileDNAmetBin.Rd man/GEcollection-class.Rd man/splitChrs.Rd man/plotMeth.Rd man/findDMR.Rd man/GElist-class.Rd man/BSdata-class.Rd man/methylPipe-package.Rd man/getCpos.Rd man/methstats.Rd man/consolidateDMRs.Rd man/getCposDensity.Rd man/tabixdata2GR.Rd man/chiCombP.Rd
exec/methinfo.pl
exec/pool_reads.py
methylPipe documentation built on Nov. 17, 2017, 12:04 p.m.